Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018323.1 Corchorus olitorius cultivar O-4 contig18356, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35104

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19--51
2
16.5
2
100
0
66
51
0
0
48
1.00
176--482
22
14.1
22
71
7
182
35
17
10
36
1.84
484--513
2
15.0
2
100
0
60
50
0
0
50
1.00
1846--1874
14
2.1
14
100
0
58
27
13
20
37
1.91
1948--2082
72
1.9
72
90
4
222
35
10
8
45
1.70
1948--2121
69
2.5
72
82
5
180
36
10
8
44
1.69
3287--3542
128
2.0
128
93
0
440
44
9
10
35
1.71
8179--8235
17
3.6
16
79
13
64
7
14
36
42
1.72
9821--9865
16
2.7
17
86
6
74
4
13
40
42
1.64
9874--9914
16
2.5
17
76
15
50
4
14
36
43
1.67
16581--16703
61
2.0
61
100
0
246
24
16
26
33
1.96
19279--19318
21
1.9
21
84
0
53
17
25
25
32
1.97
19181--19321
76
1.9
76
84
3
194
17
28
29
24
1.98
25588--25627
15
2.6
16
92
4
64
15
7
10
67
1.41
26034--26072
19
2.1
19
95
4
71
51
10
10
28
1.68
28781--28822
21
2.0
21
85
0
57
16
47
21
14
1.82
32386--32425
15
2.6
16
92
4
64
12
10
12
65
1.49
33436--33500
28
2.3
28
100
0
130
36
12
21
29
1.90
34645--34693
19
2.8
18
80
20
59
6
22
0
71
1.08

Tables:   1

The End!