Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018324.1 Corchorus olitorius cultivar O-4 contig18357, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11209
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:2479 original size:16 final size:17

Alignment explanation


    Indices: 2458--2489  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

       2448 GAAATTGCGT

                             
       2458 TTTATTTTTCT-TTTTC
          1 TTTATTTTTCTATTTTC

                            
       2474 TTTATTTTTCTATTTT
          1 TTTATTTTTCTATTTT

       2490 AATTTGCACT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81


Consensus pattern (17 bp):   
TTTATTTTTCTATTTTC

Found at i:7628 original size:22 final size:22

Alignment explanation


    Indices: 7581--7626  Score: 67
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       7571 CTCGGTGGCA

                                  
       7581 CCCGGACATGACTAGGCCATAG
          1 CCCGGACATGACTAGGCCATAG

                 *       *        
       7603 CCCGGTCATGACTCGGCCAT-G
          1 CCCGGACATGACTAGGCCATAG

               
       7624 CCC
          1 CCC

       7627 CGCGCCAGGC


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  21    4  0.18
  22   18  0.82

ACGTcount: A:0.20, C:0.39, G:0.26, T:0.15


Consensus pattern (22 bp):   
CCCGGACATGACTAGGCCATAG
Done.