Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018326.1 Corchorus olitorius cultivar O-4 contig18359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62173

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17382--17433
19
2.8
20
74
11
56
48
1
0
50
1.12
32859--32884
13
2.0
13
100
0
52
15
0
30
53
1.42
33242--33292
19
2.7
19
77
14
61
47
0
1
50
1.12
34643--34744
51
2.0
50
80
12
111
23
20
13
42
1.88
37392--37423
12
2.7
12
100
0
64
0
25
31
43
1.55
38350--38379
12
2.5
12
100
0
60
60
0
6
33
1.23
39049--39139
32
2.8
33
90
5
125
27
13
16
42
1.85
39933--40005
33
2.2
33
82
4
85
10
30
41
17
1.84
39943--40017
33
2.3
33
90
2
116
12
30
37
20
1.89
45174--45208
15
2.3
15
90
0
52
60
0
11
28
1.32
45967--46002
2
18.0
2
100
0
72
50
0
0
50
1.00
46632--46773
34
4.4
33
87
5
166
22
25
21
30
1.99
46632--46754
34
3.7
34
90
3
171
21
24
21
32
1.98
46632--46767
65
2.1
64
82
8
159
22
25
20
30
1.98
48277--48301
12
2.1
12
100
0
50
16
0
8
76
1.02
55118--55165
21
2.3
21
85
7
62
35
12
10
41
1.77
59151--59181
12
2.5
13
94
5
55
90
9
0
0
0.46

Tables:   1

The End!