Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018327.1 Corchorus olitorius cultivar O-4 contig18360, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75477

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1875--1906
15
2.1
16
94
5
57
43
31
6
18
1.75
3331--3375
14
3.0
15
80
9
56
42
11
11
35
1.76
3364--3397
15
2.3
15
90
5
52
26
20
8
44
1.81
5886--6102
106
2.0
106
100
0
434
30
25
12
30
1.93
11800--11859
28
2.2
28
96
3
113
43
0
13
43
1.43
11938--12148
107
2.1
104
84
7
290
35
12
1
50
1.49
11978--12158
98
1.8
101
84
7
246
35
12
1
50
1.49
21104--21165
29
2.1
29
93
0
106
29
14
6
50
1.68
21451--21489
18
2.3
18
82
8
55
15
7
23
53
1.67
23985--24043
26
2.2
27
84
3
75
47
3
8
40
1.51
26781--26817
16
2.2
17
86
13
51
21
10
21
45
1.82
39973--40029
28
2.1
27
90
9
89
33
26
12
28
1.92
57281--57493
116
1.8
117
84
7
290
30
21
10
37
1.87
58756--58794
3
13.0
3
84
10
53
35
2
0
61
1.10
58756--58796
11
4.1
10
81
18
50
36
2
0
60
1.10
58756--58794
16
2.4
17
91
4
62
35
2
0
61
1.10
58764--58796
13
2.6
13
90
4
50
36
3
0
60
1.12
67660--67684
7
3.6
7
100
0
50
44
0
0
56
0.99
74746--74815
36
1.9
36
91
0
113
21
10
8
60
1.55

Tables:   1

The End!