Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018328.1 Corchorus olitorius cultivar O-4 contig18361, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47180

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1048--1117
31
2.3
31
87
0
95
28
8
25
37
1.85
2178--2575
202
2.0
201
89
1
609
36
20
12
30
1.89
4119--4143
13
1.9
13
100
0
50
56
0
4
40
1.18
4348--4411
13
4.9
13
80
14
69
59
0
17
23
1.37
4352--4415
21
2.9
21
73
17
58
60
0
15
23
1.34
12919--12966
23
2.1
23
96
0
87
18
41
18
20
1.90
14521--14548
14
2.0
14
100
0
56
21
14
21
42
1.88
32651--32681
16
1.9
16
100
0
62
67
12
12
6
1.40
33876--33908
7
4.7
7
89
10
50
42
0
0
57
0.98
40930--41011
25
3.2
24
67
24
60
52
10
7
29
1.63
45659--45691
16
1.9
18
88
11
52
48
0
6
45
1.27

Tables:   1

The End!