Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018331.1 Corchorus olitorius cultivar O-4 contig18364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37255

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10861--10917
30
1.9
30
85
0
78
35
21
5
38
1.76
11927--11961
19
1.9
17
88
11
52
82
2
8
5
0.91
13002--13685
125
5.5
125
84
2
743
32
17
16
33
1.92
15873--16021
73
2.0
73
98
0
289
33
14
24
27
1.94
16350--17414
215
5.0
213
82
6
1140
39
15
16
28
1.89
17142--17175
13
2.7
13
90
4
52
44
8
20
26
1.81
16391--17414
425
2.4
427
81
5
1232
38
15
17
28
1.90
18268--18476
104
2.0
104
94
0
364
36
17
17
28
1.93
24441--24764
123
2.6
122
79
5
326
39
18
10
31
1.85
30357--30394
2
19.0
2
100
0
76
50
0
0
50
1.00
32005--32047
14
3.3
14
84
9
56
41
0
11
46
1.40
36261--36313
16
3.2
16
81
5
54
50
0
39
9
1.35
36349--36391
17
2.6
16
85
3
50
51
0
41
6
1.29
36265--36425
78
2.1
78
98
0
313
38
8
33
19
1.82

Tables:   1

The End!