Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018332.1 Corchorus olitorius cultivar O-4 contig18365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35944

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
245--291
15
3.2
15
69
6
51
46
2
0
51
1.13
1508--1548
13
3.0
14
83
13
50
41
12
0
46
1.41
3771--3819
21
2.3
20
83
10
62
46
10
10
32
1.71
4080--4131
22
2.4
22
90
3
79
50
7
9
32
1.64
4419--4466
23
2.2
22
85
10
64
50
10
10
29
1.70
4434--4477
20
2.1
21
84
12
56
50
11
9
29
1.69
4540--4717
86
2.1
86
94
2
313
50
6
11
32
1.64
4753--4792
20
2.0
20
90
5
62
52
5
10
32
1.56
5161--5213
26
2.0
27
88
7
81
58
9
15
16
1.62
5663--5693
16
1.9
16
93
0
53
54
3
12
29
1.53
6292--6366
38
2.0
38
100
0
150
40
17
8
34
1.79
7094--7154
30
2.0
30
100
0
122
52
31
6
9
1.60
20930--20959
3
9.7
3
92
7
51
66
0
0
33
0.92
24908--24945
19
2.0
19
100
0
76
42
5
10
42
1.62
25101--25157
30
1.9
30
100
0
114
36
7
21
35
1.80
27476--27622
73
2.0
75
89
4
226
35
8
14
41
1.77
32711--32739
9
3.2
9
100
0
58
58
0
20
20
1.39

Tables:   1

The End!