genome.fa.s18333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018333.1 Corchorus olitorius cultivar O-4 contig18366, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62081

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5549--5588	21	2.0	20	85	5	53	52	20	2	25	1.59
7964--7988	12	2.1	12	100	0	50	76	16	0	8	1.02
8363--8401	17	2.2	18	78	21	55	43	12	5	38	1.65
8367--8401	17	2.1	16	94	5	61	42	14	5	37	1.69
10714--10739	13	2.0	13	100	0	52	30	7	15	46	1.74
11201--11245	8	5.4	8	87	10	63	24	24	0	51	1.49
15624--16793	22	53.3	22	65	19	202	36	16	9	37	1.80
15901--15984	23	3.7	23	83	3	89	42	13	4	39	1.65
16535--16589	28	1.9	29	88	3	85	40	5	9	45	1.59
16578--16749	62	2.7	62	82	6	186	35	16	9	38	1.82
16586--16798	107	2.0	106	81	9	245	35	15	8	39	1.79
16830--16890	24	2.6	24	82	7	72	44	18	4	32	1.71
16828--17037	22	9.5	22	69	12	92	35	14	11	37	1.83
16854--16998	66	2.2	65	82	1	173	35	15	13	35	1.87
17114--17164	21	2.4	22	83	6	68	39	13	11	35	1.82
17124--17163	21	1.9	21	94	0	71	35	12	12	40	1.81
17818--17874	22	2.6	22	81	13	73	36	10	12	40	1.77
18056--18332	150	1.8	150	79	4	317	31	18	18	32	1.95
21164--21731	22	25.5	22	68	16	217	37	10	17	34	1.84
21606--21748	44	3.3	43	80	6	119	38	11	13	37	1.80
23508--23552	13	3.5	13	100	0	90	37	15	0	46	1.46
25488--25572	4	21.2	4	100	0	170	50	24	0	24	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48384--48423	19	2.1	19	86	9	55	25	12	10	52	1.70
53863--53935	29	2.5	29	77	6	76	32	20	15	31	1.93
55097--55136	21	1.9	21	89	0	62	47	25	7	20	1.75
55431--55539	2	59.0	2	68	21	51	45	0	2	51	1.15
55405--55539	9	15.1	9	66	22	63	46	0	2	50	1.16
58643--58736	45	2.2	43	90	7	147	38	21	5	35	1.76
60406--60478	36	2.0	36	94	0	128	34	6	26	32	1.83
61952--62007	29	2.0	28	89	3	85	39	19	10	30	1.86

Tables:   1

The End!