Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018334.1 Corchorus olitorius cultivar O-4 contig18367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107975

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13178--13234
29
2.0
29
96
0
105
42
19
7
31
1.78
19091--19117
4
6.8
4
100
0
54
22
0
0
77
0.76
19909--19943
2
17.5
2
100
0
70
48
0
0
51
1.00
20608--20675
35
1.9
35
84
0
91
45
11
7
35
1.69
31856--31894
3
13.3
3
89
5
62
64
0
33
2
1.08
32013--32042
15
2.1
14
93
6
51
0
16
0
83
0.65
34198--34291
22
4.3
21
79
11
100
41
17
9
31
1.81
34304--34404
22
4.6
22
75
9
82
43
15
6
33
1.74
34545--34763
22
10.0
22
69
8
115
35
11
10
42
1.76
34610--34764
66
2.3
66
78
6
161
34
11
12
41
1.79
35193--35329
70
2.0
70
92
0
229
20
14
22
42
1.88
57257--57354
48
2.0
48
96
0
178
40
8
19
31
1.81
61100--61128
12
2.3
13
94
5
51
86
13
0
0
0.58
63607--63640
17
2.0
17
100
0
68
41
11
23
23
1.87
66539--66577
14
2.9
13
80
3
51
53
2
2
41
1.28
66563--66816
122
2.0
128
89
6
394
49
1
10
37
1.49
72584--72635
3
17.3
3
100
0
104
32
0
0
67
0.91
74576--74618
18
2.3
18
84
11
52
53
18
16
11
1.72
76627--76653
13
2.1
13
100
0
54
62
14
0
22
1.31
77670--77707
20
1.9
20
84
10
51
23
23
31
21
1.98
81670--81757
6
14.5
6
86
1
95
46
3
46
3
1.36
84102--84132
11
2.8
11
95
0
53
3
9
0
87
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84152--84353
103
1.9
105
87
7
297
41
7
8
42
1.64
86457--86503
23
2.0
23
100
0
94
25
8
17
48
1.74
105929--106050
31
4.0
31
72
16
128
25
18
18
38
1.92
106057--106159
31
3.4
31
71
10
104
30
19
14
35
1.92
105925--106159
97
2.5
91
78
14
262
27
18
17
36
1.94

Tables:   1

The End!