Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018336.1 Corchorus olitorius cultivar O-4 contig18369, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31335

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4296--4336
20
2.1
20
86
4
57
48
4
7
39
1.52
4301--4485
93
2.0
93
94
0
325
43
12
9
34
1.74
5633--5670
20
1.9
20
88
0
58
28
21
10
39
1.86
8169--8312
18
7.5
18
67
21
87
22
34
16
26
1.95
8167--8318
39
3.9
39
97
0
286
22
32
15
28
1.95
8187--8294
21
5.4
21
68
20
88
19
34
16
29
1.94
8492--8516
13
1.9
13
100
0
50
16
12
8
64
1.49
9150--9193
18
2.5
17
85
7
61
31
0
2
65
1.05
9693--9909
109
2.0
109
96
1
400
43
14
11
30
1.81
24477--24550
36
2.1
36
97
0
139
39
13
10
36
1.80
28511--28560
10
5.0
10
76
13
50
2
26
0
72
0.96
28503--28565
26
2.3
27
86
8
83
4
23
1
69
1.16
28541--28620
34
2.3
34
89
6
117
7
22
13
56
1.62
28838--28882
14
3.4
14
75
25
53
55
2
13
28
1.50
28827--28888
26
2.4
26
91
5
99
48
3
14
33
1.60
29284--29323
18
2.2
18
95
0
71
37
5
2
55
1.35
29604--29648
23
2.0
23
95
0
81
42
4
2
51
1.34

Tables:   1

The End!