Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018340.1 Corchorus olitorius cultivar O-4 contig18373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65341

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3583--3654
37
1.9
38
85
2
101
31
22
19
26
1.97
3820--3862
2
21.5
2
100
0
86
48
0
0
51
1.00
4755--4810
31
1.9
31
82
13
75
46
7
12
33
1.69
10498--10549
25
2.0
26
88
3
79
38
9
7
44
1.66
16922--16984
3
21.3
3
86
3
92
0
26
0
73
0.84
23428--23469
21
2.0
21
85
0
57
35
16
14
33
1.89
28714--28752
14
2.9
13
80
3
51
41
0
5
53
1.23
28774--28810
18
2.1
18
100
0
74
29
21
5
43
1.75
28983--29035
15
3.6
15
76
2
54
41
1
1
54
1.22
30972--31048
34
2.3
34
93
2
129
40
29
7
22
1.82
31465--31566
21
4.9
21
85
0
114
21
13
22
42
1.88
33299--33331
2
16.5
2
100
0
66
51
0
0
48
1.00
33627--33706
42
1.9
42
97
0
151
32
3
15
48
1.62
35888--35977
43
2.1
43
97
0
171
32
6
22
38
1.80
44505--44530
12
2.2
12
100
0
52
30
15
19
34
1.93
45809--46015
103
2.0
103
99
0
405
34
15
23
26
1.94
47312--47386
36
2.1
36
92
0
123
42
8
21
28
1.81
48623--48659
13
2.8
13
95
0
65
43
13
10
32
1.79
50308--50348
18
2.3
18
82
0
55
24
7
7
60
1.48
56143--56203
31
2.0
31
100
0
122
26
24
13
36
1.92
56466--56524
24
2.5
24
88
0
91
25
5
22
47
1.71
59083--59174
46
2.0
46
97
0
175
30
35
15
18
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59745--59791
22
2.1
22
84
7
60
61
2
12
23
1.42
59669--59853
93
2.0
95
89
2
284
53
2
13
30
1.54
59889--59950
31
2.0
31
87
0
88
45
4
20
29
1.72
62169--62224
24
2.3
24
90
0
85
23
10
26
39
1.87

Tables:   1

The End!