Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018344.1 Corchorus olitorius cultivar O-4 contig18377, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33333

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7021--7062
8
5.4
8
97
2
77
88
11
0
0
0.53
7649--7751
33
3.1
32
89
8
145
21
31
25
22
1.98
7872--8442
33
17.3
33
82
4
247
18
18
29
33
1.95
7877--8443
66
8.6
66
83
3
512
18
18
29
33
1.95
7872--8443
99
5.8
99
80
2
497
18
18
29
33
1.95
8605--8680
33
2.3
33
95
0
134
22
15
31
30
1.95
8605--8702
33
3.0
33
87
3
117
23
16
32
27
1.96
18882--18928
20
2.3
20
92
7
78
63
12
10
12
1.52
22617--22778
65
2.5
65
87
0
243
47
11
16
24
1.79
28871--28948
33
2.5
33
89
8
119
23
11
21
43
1.85
31294--31630
178
1.9
177
86
3
480
35
16
13
33
1.88
31859--31883
12
2.1
12
100
0
50
24
0
8
68
1.16

Tables:   1

The End!