Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018345.1 Corchorus olitorius cultivar O-4 contig18378, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52379

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1296--1370
37
2.0
37
94
0
132
42
18
6
32
1.76
3125--3197
23
3.3
23
80
7
96
56
9
5
28
1.54
3125--3201
21
3.5
22
79
10
86
57
10
5
27
1.53
3125--3208
44
1.9
44
87
0
123
58
9
4
27
1.50
9172--9197
2
13.0
2
100
0
52
50
0
50
0
1.00
27766--27830
31
2.2
29
80
5
76
26
18
13
41
1.88
29403--29825
211
2.0
211
100
0
846
40
19
14
25
1.90
29614--30017
157
2.5
159
88
1
587
39
19
14
26
1.90
43087--43128
3
14.0
3
100
0
84
66
0
0
33
0.92
44870--44897
2
14.0
2
100
0
56
50
0
0
50
1.00
47900--48084
90
2.0
91
98
1
363
19
17
11
50
1.76
51811--51840
15
1.9
16
93
6
53
3
6
10
80
1.01

Tables:   1

The End!