Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018346.1 Corchorus olitorius cultivar O-4 contig18379, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64089

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
524--564
3
14.0
3
94
5
75
34
0
0
65
0.93
580--630
4
13.0
4
87
4
77
29
0
19
50
1.48
573--622
12
4.2
12
94
0
82
34
0
16
50
1.45
763--788
3
8.7
3
100
0
52
34
0
0
65
0.93
1718--1772
25
2.2
24
78
9
56
58
5
7
29
1.48
4147--4189
22
2.0
22
85
0
59
53
0
11
34
1.37
4159--4334
92
1.9
91
91
3
291
51
0
11
36
1.42
4978--5006
15
1.9
15
100
0
58
41
13
0
44
1.44
6506--6655
60
2.5
60
80
6
187
33
17
16
32
1.92
7390--7420
16
1.9
16
93
0
53
51
0
0
48
1.00
7558--7700
60
2.4
60
80
2
162
36
17
11
34
1.85
21609--21869
131
2.0
128
91
5
429
38
16
11
34
1.84
23386--23461
38
2.0
38
89
0
116
35
21
13
30
1.91
31288--31312
9
2.8
9
100
0
50
92
0
8
0
0.40
32897--32930
7
4.7
7
88
3
50
0
41
0
58
0.98
37021--37070
25
2.0
25
96
0
91
36
12
10
42
1.76
41297--41369
10
7.3
10
73
21
64
4
26
57
12
1.53
41297--41369
20
3.6
19
76
10
74
4
26
57
12
1.53
46999--47056
16
3.6
16
79
6
64
27
5
5
62
1.38
46998--47052
17
3.3
17
76
5
58
25
5
5
63
1.38
46998--47062
33
2.0
33
84
3
87
32
4
4
58
1.39
48617--48677
32
1.9
32
96
0
113
45
6
21
26
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49911--49996
16
5.5
15
78
9
82
9
20
33
36
1.85
49905--50002
32
3.1
32
85
7
137
9
21
33
35
1.85
50219--50300
42
2.0
42
95
0
146
36
4
19
39
1.73
52974--53006
12
2.8
12
90
0
57
45
36
15
3
1.61
53009--53097
16
5.6
16
70
15
67
47
40
7
4
1.53
52995--53097
32
3.2
32
88
0
152
46
39
8
4
1.56
59278--59320
16
2.7
15
89
10
68
11
6
13
67
1.41
59732--59828
49
2.0
50
82
10
119
38
10
13
38
1.79
62162--62211
21
2.4
21
89
0
73
16
48
24
12
1.79

Tables:   1

The End!