Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018349.1 Corchorus olitorius cultivar O-4 contig18382, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17186
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:15388 original size:2 final size:2

Alignment explanation


    Indices: 15375--15424  Score: 50
    Period size: 2  Copynumber: 24.5  Consensus size: 2

      15365 ATTTATTATC

                                           *                              
      15375 AT AT AT ACT AT AT AGT AGT -T AG AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT A-T AT AT A-T A-T AT AT AT AT AT AT AT AT AT AT AT AT

                         
      15417 AT A- AT AT A
          1 AT AT AT AT A

      15425 GTTTGAGTAA


Statistics
Matches: 42,  Mismatches: 2, Indels: 8
        0.81            0.04        0.15

Matches are distributed among these distances:
   1    2  0.05
   2   34  0.81
   3    6  0.14

ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44


Consensus pattern (2 bp):   
AT

Done.