Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001835.1 Corchorus olitorius cultivar O-4 contig01835, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 680

Length: 1134
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32


Found at i:690 original size:12 final size:12

Alignment explanation


    Indices: 673--704  Score: 64
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        663 ACCTGTCAAT

                        
        673 TCGTGTTTCGTG
          1 TCGTGTTTCGTG

                        
        685 TCGTGTTTCGTG
          1 TCGTGTTTCGTG

                    
        697 TCGTGTTT
          1 TCGTGTTT

        705 ACATAGGGTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.00, C:0.16, G:0.31, T:0.53


Consensus pattern (12 bp):   
TCGTGTTTCGTG
Done.