Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018351.1 Corchorus olitorius cultivar O-4 contig18384, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40924

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
784--823
11
3.7
11
93
3
64
10
60
30
0
1.30
3020--3049
2
15.5
2
93
6
53
50
0
0
50
1.00
4004--4421
205
2.0
205
97
0
782
44
12
14
28
1.82
9728--9846
46
2.6
46
94
1
202
33
6
16
42
1.75
10152--10178
14
1.9
14
100
0
54
22
22
18
37
1.95
10552--10578
14
1.9
14
100
0
54
22
22
18
37
1.95
10026--10807
400
2.0
398
96
1
1451
30
11
19
38
1.87
12757--12798
6
7.0
6
97
0
75
14
16
2
66
1.35
21922--21950
12
2.3
13
94
5
51
89
0
0
10
0.48
23188--23222
18
2.0
17
88
5
52
71
14
5
8
1.29
26088--26125
2
19.5
2
94
5
69
50
0
0
50
1.00
31349--31376
14
2.0
14
100
0
56
35
7
21
35
1.81
38945--38982
18
2.0
19
85
10
51
47
2
18
31
1.62
39371--39404
13
2.6
13
86
13
52
82
0
17
0
0.67
39375--39404
6
4.8
6
92
8
51
83
0
16
0
0.65
39558--39628
31
2.3
31
87
0
97
52
11
14
22
1.73
39908--40000
44
2.2
43
90
5
145
38
21
5
34
1.76

Tables:   1

The End!