Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018352.1 Corchorus olitorius cultivar O-4 contig18385, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3778
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35


Found at i:3227 original size:28 final size:27

Alignment explanation


    Indices: 3196--3260  Score: 69
    Period size: 27  Copynumber: 2.4  Consensus size: 27

       3186 TTACTATTTT

                         *        *     
       3196 ACCCTTGGAATGGGTAAATTACTAAATC
          1 ACCCTTGGAAT-GCTAAATTACAAAATC

                        *              *
       3224 ACCCTT-GAGATTCTAAATTACAAAATT
          1 ACCCTTGGA-ATGCTAAATTACAAAATC

                      
       3251 ACCCTTGGAA
          1 ACCCTTGGAA

       3261 GAATAATTTA


Statistics
Matches: 31,  Mismatches: 4, Indels: 5
        0.77            0.10        0.12

Matches are distributed among these distances:
  27   21  0.68
  28   10  0.32

ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29


Consensus pattern (27 bp):   
ACCCTTGGAATGCTAAATTACAAAATC
Done.