Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018353.1 Corchorus olitorius cultivar O-4 contig18386, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6086
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:3471 original size:2 final size:2

Alignment explanation


    Indices: 3464--3488  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       3454 CAGTTTGTAA

                                                 
       3464 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

       3489 CGCTTAATCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:5069 original size:23 final size:23

Alignment explanation


    Indices: 5039--5084  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       5029 TGGAGGGGTG

                                   
       5039 AAAATATTAATTGTAAATAGGTA
          1 AAAATATTAATTGTAAATAGGTA

                                   
       5062 AAAATATTAATTGTAAATAGGTA
          1 AAAATATTAATTGTAAATAGGTA

       5085 GCCAATGTGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35


Consensus pattern (23 bp):   
AAAATATTAATTGTAAATAGGTA
Done.