Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018356.1 Corchorus olitorius cultivar O-4 contig18389, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40350

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--31
2
12.5
2
100
0
50
48
0
0
52
1.00
5060--5433
206
1.8
206
92
2
644
34
18
18
28
1.94
13296--13389
47
2.0
47
91
0
152
32
31
8
26
1.86
29112--29141
2
15.0
2
100
0
60
50
0
0
50
1.00
29950--30009
22
2.7
22
92
0
93
26
43
25
5
1.75
30704--30743
20
2.0
20
100
0
80
40
0
10
50
1.36
31065--31104
20
2.0
20
100
0
80
20
20
25
35
1.96
34025--34066
2
21.0
2
90
9
68
50
0
2
47
1.14
34137--34238
47
2.2
47
89
0
159
35
21
20
22
1.96
39832--39881
6
8.3
6
90
0
55
36
8
38
18
1.80
39832--39881
18
2.8
18
84
0
64
36
8
38
18
1.80

Tables:   1

The End!