Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001836.1 Corchorus olitorius cultivar O-4 contig01836, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 817

Length: 1362
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37


Found at i:112 original size:50 final size:50

Alignment explanation


    Indices: 34--184  Score: 257
    Period size: 50  Copynumber: 3.0  Consensus size: 50

         24 TAAAATGCCC

                      *          *                  *         
         34 TTTGAAAAGCAAATTTTGATCTTAGACTCACAAATGGAATACAATCTTAT
          1 TTTGAAAAGCGAATTTTGATCCTAGACTCACAAATGGAATGCAATCTTAT

                                   *      *                   
         84 TTTGAAAAGCGAATTTTGATCCTGGACTCAAAAATGGAATGCAATCTTAT
          1 TTTGAAAAGCGAATTTTGATCCTAGACTCACAAATGGAATGCAATCTTAT

                                                              
        134 TTTGAAAAGCGAATTTTGATCCTAGACTCACAAATGGAATGCAATCTTAT
          1 TTTGAAAAGCGAATTTTGATCCTAGACTCACAAATGGAATGCAATCTTAT

             
        184 T
          1 T

        185 ATAAAACTTC


Statistics
Matches: 94,  Mismatches: 7, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  50   94  1.00

ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33


Consensus pattern (50 bp):   
TTTGAAAAGCGAATTTTGATCCTAGACTCACAAATGGAATGCAATCTTAT
Done.