Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018361.1 Corchorus olitorius cultivar O-4 contig18394, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2130
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36


Found at i:2050 original size:32 final size:32

Alignment explanation


    Indices: 2014--2084  Score: 97
    Period size: 32  Copynumber: 2.2  Consensus size: 32

       2004 AAATTGATAG

                    *     *          *      
       2014 ACAAAATAGCCCTCGAATTTTGACATAGAAGA
          1 ACAAAATAACCCTCAAATTTTGACAAAGAAGA

                                        *  *
       2046 ACAAAATAACCCTCAAATTTTGACAAAGTAGG
          1 ACAAAATAACCCTCAAATTTTGACAAAGAAGA

                   
       2078 ACAAAAT
          1 ACAAAAT

       2085 GTTCTTTGAA


Statistics
Matches: 34,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  32   34  1.00

ACGTcount: A:0.48, C:0.18, G:0.13, T:0.21


Consensus pattern (32 bp):   
ACAAAATAACCCTCAAATTTTGACAAAGAAGA
Done.