Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018364.1 Corchorus olitorius cultivar O-4 contig18397, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9773
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.23
Found at i:69 original size:38 final size:37
Alignment explanation
Indices: 8--101 Score: 161
Period size: 38 Copynumber: 2.5 Consensus size: 37
1 GCACACA
8 ATGAGCGTCGGGGCCAAAATGCCATAGGTGTTACATC
1 ATGAGCGTCGGGGCCAAAATGCCATAGGTGTTACATC
45 ATGAGCGTCGGGTGCCAAAATGCCATAGGTGTTACATC
1 ATGAGCGTCGGG-GCCAAAATGCCATAGGTGTTACATC
* *
83 ATTAGCGTCGGGGGCAAAA
1 ATGAGCGTCGGGGCCAAAA
102 AATGGCTAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
37 18 0.33
38 36 0.67
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (37 bp):
ATGAGCGTCGGGGCCAAAATGCCATAGGTGTTACATC
Found at i:386 original size:48 final size:46
Alignment explanation
Indices: 280--1339 Score: 193
Period size: 48 Copynumber: 23.9 Consensus size: 46
270 AAGCGTCAGG
* * * * *
280 GGCTAAAATGCCATAGGTGTTACATCATAAGCGTCAGGGGCAAAAAT
1 GGCTAAAATGCCA-AAGAGTTACACCATGAGCGTCGGGGGCAAAAAT
327 GGCTAAAATGCCAAAG-GTTAACCACCATGAGCGTCGGGGGCCAAAAAT
1 GGCTAAAATGCCAAAGAGTT-A-CACCATGAGCGTCGGGGG-CAAAAAT
* *
375 GG-TCAAAATGCCAAAGATGTTACACCCTGAGCGTTGGGGGC-AAAAT
1 GGCT-AAAATGCCAAAGA-GTTACACCATGAGCGTCGGGGGCAAAAAT
* * * ** * *
421 -GC---CAT----AGGTGTTACGTCATTAGTGTCGGGGGCAAAAAAT
1 GGCTAAAATGCCAAAGAGTTACACCATGAGCGTCGGGGGC-AAAAAT
* * *
460 GACTAAAATGGCAAAG-GTTAACCACCATGAGCGTCGGGGGCCAAAAT
1 GGCTAAAATGCCAAAGAGTT-A-CACCATGAGCGTCGGGGGCAAAAAT
** * * * *
507 -GC--CGAT---AAGGTGTTACATCATTTGAGCGTCGGGGGTAAAAAAT
1 GGCTAAAATGCCAAAGAGTTACACCA--TGAGCGTCGGGGG-CAAAAAT
* * * * * * *
550 GGCCAAAATGCCCAATGTGTTAAATCATTAGCGTCGTGGGC------
1 GGCTAAAATG-CCAAAGAGTTACACCATGAGCGTCGGGGGCAAAAAT
* * * * *
591 --C-AAAATGCCATAGGTGTTACATCATTAGCGTCGGGGACAAGAAAT
1 GGCTAAAATGCCA-AAGAGTTACACCATGAGCGTCGGGGGCAA-AAAT
* * * * *
636 GGCCAAAATGCCAAAG-GTCTTCCACCATGAGTGTCGAGGGCCAAAAT
1 GGCTAAAATGCCAAAGAG--TTACACCATGAGCGTCGGGGGCAAAAAT
* * ** * * *
683 GG---ACAT----AAGTGTTTTATCATGAGGGTCGTGGGCAAAAAAT
1 GGCTAAAATGCCAAAGAGTTACACCATGAGCGTCGGGGGC-AAAAAT
* * * * * *
723 GCCCAAAATGCCGAAG-GTATTAAATCATGAGCGTCGGGGGCCAAAAT
1 GGCTAAAATGCCAAAGAG--TTACACCATGAGCGTCGGGGGCAAAAAT
* * * * * *
770 -G-T--CAT----AGGTGTTACATCATAAGCGTCGGGGGAAAAAAAT
1 GGCTAAAATGCCAAAGAGTTACACCATGAGCGTCGGGGG-CAAAAAT
* * * *
809 GGCTAAAACGACAAAGGTGTTACACCATGAGCGTCGGGGGCCAAAAT
1 GGCTAAAATGCCAAA-GAGTTACACCATGAGCGTCGGGGGCAAAAAT
* * ** * *
856 -GCT---AT----AGGTGTTACATAATAAGCGTCGGGGGTAAAAAAT
1 GGCTAAAATGCCAAAGAGTTACACCATGAGCGTCGGGGG-CAAAAAT
*
895 GGCTAAAATGCCAAAG-GTTAACCACCATGAGCGTTGGGGGCCAAAAAT
1 GGCTAAAATGCCAAAGAGTT-A-CACCATGAGCGTCGGGGG-CAAAAAT
* * * *
943 GACAAAAATTCCAAAG-GTATTACATCATGAGCGTCGGGGGC------
1 GGCTAAAATGCCAAAGAG--TTACACCATGAGCGTCGGGGGCAAAAAT
* * * * * *
984 --C-AAAATGCCATAGTTGTTACATCATTAGCGTCAGGGCCAAAAAAT
1 GGCTAAAATGCCAAAG-AGTTACACCATGAGCGTCGGGGGC-AAAAAT
*
1029 GGCTAAAATGCCAAAG-GTTAACCACCATAAGCGTCGGGGGCCAAAAAT
1 GGCTAAAATGCCAAAGAGTT-A-CACCATGAGCGTCGGGGG-CAAAAAT
* * * * *
1077 GACCCCAAAATGCCAAAGGTGTTACACCATGAGCGTTGGGGGCCAAAAT
1 G--GCTAAAATGCCAAA-GAGTTACACCATGAGCGTCGGGGGCAAAAAT
1126 GGC----AT-----AG-GTTA-ACTCATGAGCGTCGGGGGCAAAAAAT
1 GGCTAAAATGCCAAAGAGTTACAC-CATGAGCGTCGGGGGC-AAAAAT
* * * * *
1163 GGCTAAAATGCCGAAGGTGTTAAATCATGAGCGTC----G-----AG
1 GGCTAAAATGCC-AAAGAGTTACACCATGAGCGTCGGGGGCAAAAAT
* * * * * *
1201 GGCTAAAATCCCATAGGTGTTACATCATTAGCGTCGGGGCCAAAAAAT
1 GGCTAAAATGCCA-AAGAGTTACACCATGAGCGTCGGGGGC-AAAAAT
*
1249 GGCTAAAATGCCAAAG-GTTAACCACCATAAGCGTCGGGGGCCAAAAAT
1 GGCTAAAATGCCAAAGAGTT-A-CACCATGAGCGTCGGGGG-CAAAAAT
* * *
1297 GTCCCCAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGGC
1 G--GCTAAAATGCCAAA-GAGTTACACCATGAGCGTCGGGGGC
1340 CATGAGTTTC
Statistics
Matches: 753, Mismatches: 131, Indels: 256
0.66 0.11 0.22
Matches are distributed among these distances:
35 2 0.00
36 19 0.03
37 30 0.04
38 132 0.18
39 37 0.05
40 20 0.03
41 8 0.01
42 18 0.02
43 18 0.02
44 8 0.01
45 4 0.01
46 28 0.04
47 72 0.10
48 260 0.35
49 13 0.02
50 74 0.10
51 4 0.01
52 6 0.01
ACGTcount: A:0.34, C:0.20, G:0.27, T:0.20
Consensus pattern (46 bp):
GGCTAAAATGCCAAAGAGTTACACCATGAGCGTCGGGGGCAAAAAT
Found at i:415 original size:133 final size:133
Alignment explanation
Indices: 218--505 Score: 393
Period size: 133 Copynumber: 2.2 Consensus size: 133
208 GGTGTTACAT
* * *
218 CATGAGTGTCGGGTAGCAAAAAATGGAAAAATAGCCAAAAGTGTTACACCATAAGCGTCAGGGGC
1 CATGAGCGTCGGG-GGCCAAAAATGGAAAAATAGCCAAAAGTGTTACACCATAAGCGTCAGGGGC
*
283 TAAAATGCCATAGGTGTTACATCATAAGCGTCAGGGGC-AAAAATGGCTAAAATGCCAAAGGTTA
65 -AAAATGCCATAGGTGTTACATCATAAGCGTCAGGGGCAAAAAATGACTAAAATGCCAAAGGTTA
347 ACCAC
129 ACCAC
* * * **
352 CATGAGCGTCGGGGGCCAAAAATGGTCAAAAT-GCC-AAAGATGTTACACCCTGAGCGTTGGGGG
1 CATGAGCGTCGGGGGCCAAAAATGG-AAAAATAGCCAAAAG-TGTTACACCATAAGCGTCAGGGG
* * * * *
415 CAAAATGCCATAGGTGTTACGTCATTAGTGTCGGGGGCAAAAAATGACTAAAATGGCAAAGGTTA
64 CAAAATGCCATAGGTGTTACATCATAAGCGTCAGGGGCAAAAAATGACTAAAATGCCAAAGGTTA
480 ACCAC
129 ACCAC
485 CATGAGCGTCGGGGGCCAAAA
1 CATGAGCGTCGGGGGCCAAAA
506 TGCCGATAAG
Statistics
Matches: 137, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
132 37 0.27
133 83 0.61
134 17 0.12
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.18
Consensus pattern (133 bp):
CATGAGCGTCGGGGGCCAAAAATGGAAAAATAGCCAAAAGTGTTACACCATAAGCGTCAGGGGCA
AAATGCCATAGGTGTTACATCATAAGCGTCAGGGGCAAAAAATGACTAAAATGCCAAAGGTTAAC
CAC
Found at i:593 original size:223 final size:221
Alignment explanation
Indices: 35--599 Score: 675
Period size: 223 Copynumber: 2.5 Consensus size: 221
25 AATGCCATAG
* *
35 GTGTTACATCATGAGCGTCGGGTGCCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGGCAA
1 GTGTTACACCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGG-AA
**
100 AAAATGGCTAAAATGCCAAAGGTTAACTAGAATGAG-GCTCGGGGGCCAAAAATGCCCAAAATGC
65 AAAATGGCTAAAATGCCAAAGGTTAAC-ACCATGAGCG-TCGGGGGCCAAAAATGCCCAAAATGC
* * * *
164 TAAAGGTGTTATACCACGGAGACGTCGGGGGCCAAAATGCCGTAGGTGTTACATCATGAGTGTCG
128 CAAAGATGTTACACCACGGAGACGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGTGTCG
229 GGTAGCAAAAAATGGAAAAATAGCCAAAA
193 GGTAGCAAAAAATGGAAAAATAGCCAAAA
* * * * * *
258 GTGTTACACCATAAGCGTCAGGGGCTAAAATGCCATAGGTGTTACATCATAAGCGTCAGGGGCAA
1 GTGTTACACCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGGAAA
**
323 AAATGGCTAAAATGCCAAAGGTTAACCACCATGAGCGTCGGGGGCCAAAAATGGTCAAAATGCCA
66 AAATGGCTAAAATGCCAAAGGTTAA-CACCATGAGCGTCGGGGGCCAAAAATGCCCAAAATGCCA
* * * *
388 AAGATGTTACACC-CTGAG-CGTTGGGGG-CAAAATGCCATAGGTGTTACGTCATTAGTGTCGGG
130 AAGATGTTACACCACGGAGACGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGTGTCGGG
* *
450 -GGCAAAAAAT-GACTAAAAT-GGC-AAA
195 TAGCAAAAAATGGA--AAAATAGCCAAAA
475 G-GTTAACCACCATGAGCGTCGGGGGCCAAAATGCCGATAAGGTGTTACATCATTTGAGCGTCGG
1 GTGTT-A-CACCATGAGCGTCGGGGGCCAAAATGCC-AT-AGGTGTTACATCA-TT-AGCGTCGG
* * * * *
539 GGGTAAAAAATGGCCAAAATGCCCAATGTGTTAA-ATCATTAGCGTCGTGGGCC-AAAATGCC
60 GGG-AAAAAATGGCTAAAATG-CCAAAG-GTTAACACCATGAGCGTCGGGGGCCAAAAATGCC
600 ATAGGTGTTA
Statistics
Matches: 294, Mismatches: 35, Indels: 27
0.83 0.10 0.08
Matches are distributed among these distances:
216 3 0.01
217 7 0.02
218 36 0.12
219 39 0.13
220 21 0.07
221 5 0.02
222 85 0.29
223 88 0.30
224 5 0.02
225 5 0.02
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.20
Consensus pattern (221 bp):
GTGTTACACCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGGAAA
AAATGGCTAAAATGCCAAAGGTTAACACCATGAGCGTCGGGGGCCAAAAATGCCCAAAATGCCAA
AGATGTTACACCACGGAGACGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGTGTCGGGT
AGCAAAAAATGGAAAAATAGCCAAAA
Found at i:608 original size:38 final size:38
Alignment explanation
Indices: 550--623 Score: 114
Period size: 38 Copynumber: 1.9 Consensus size: 38
540 GGTAAAAAAT
*
550 GGCCAAAATGCCCAATGTGTTAAATCATTAGCGTCGTG
1 GGCCAAAATGCCCAAGGTGTTAAATCATTAGCGTCGTG
*
588 GGCCAAAATG-CCATAGGTGTTACATCATTAGCGTCG
1 GGCCAAAATGCCCA-AGGTGTTAAATCATTAGCGTCG
624 GGGACAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 3 0.09
38 30 0.91
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (38 bp):
GGCCAAAATGCCCAAGGTGTTAAATCATTAGCGTCGTG
Found at i:647 original size:86 final size:86
Alignment explanation
Indices: 356--1294 Score: 739
Period size: 86 Copynumber: 10.8 Consensus size: 86
346 AACCACCATG
* * * * * *
356 AGCGTCGGGGGCCAAAAATGGTCAAAATGCCAAAGATGTTACACCCTGAGCGTTGGGGG-CAAAA
1 AGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAACCATGAGCGTCGGGGGCCAAAA
*
420 TGCCATAGGTGTTACGTCATT
66 TGCCATAGGTGTTACATCATT
* * * *
441 AGTGTCGGGGGCAAAAAATGACTAAAATGGCAAA-G-GTTAACCACCATGAGCGTCGGGGGCCAA
1 AGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAA--ACCATGAGCGTCGGGGGCCAA
504 AATGCCGATAAGGTGTTACATCATTT
64 AATGCC-AT-AGGTGTTACATCA-TT
* * * * * *
530 GAGCGTCGGGGGTAAAAAATGGCCAAAATGCCCAATGTGTTAAATCATTAGCGTCGTGGGCCAAA
1 -AGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAACCATGAGCGTCGGGGGCCAAA
595 ATGCCATAGGTGTTACATCATT
65 ATGCCATAGGTGTTACATCATT
* * * ** * *
617 AGCGTCGGGGACAAGAAATGGCCAAAATGCCAAAGGTCTTCCACCATGAGTGTCGAGGGCCAAAA
1 AGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAACCATGAGCGTCGGGGGCCAAAA
* * ** *
682 TGGACATAAGTGTTTTATCATG
66 T-GCCATAGGTGTTACATCATT
* * * * * *
704 AGGGTCGTGGGCAAAAAATGCCCAAAATGCCGAAGGTATTAAATCATGAGCGTCGGGGGCCAAAA
1 AGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAACCATGAGCGTCGGGGGCCAAAA
* *
769 TGTCATAGGTGTTACATCATA
66 TGCCATAGGTGTTACATCATT
* * * * *
790 AGCGTCGGGGGAAAAAAATGGCTAAAACGACAAAGGTGTTACACCATGAGCGTCGGGGGCCAAAA
1 AGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAACCATGAGCGTCGGGGGCCAAAA
* * *
855 TGCTATAGGTGTTACATAATA
66 TGCCATAGGTGTTACATCATT
* * *
876 AGCGTCGGGGGTAAAAAATGGCTAAAATGCCAAA-G-GTTAACCACCATGAGCGTTGGGGGCCAA
1 AGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAA--ACCATGAGCGTCGGGGGCC-A
* * *
939 AAATGACAAAAATTCCAAAGGTATTACATCATG
63 AAATG---------CCATAGGTGTTACATCATT
* * * * *
972 AGCGTC--GGG--------GGCCAAAATGCCATAGTTGTTACATCATTAGCGTCAGGGCCAAAAA
1 AGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAACCATGAGCGTC-GGG-------
* * * * *
1027 ATGGCTAAAATGCCAAAGGT-TAACCACCATA
58 --GGCCAAAATGCCATAGGTGTTA-CATCATT
* * * *
1058 AGCGTCGGGGGCCAAAAATGACCCCAAAATGCCAAAGGTGTTACACCATGAGCGTTGGGGGCCAA
1 AGCGTCGGGGGCAAAAAATG--GCCAAAATGCCAAAGGTGTTAAACCATGAGCGTCGGGGGCCAA
* * *
1123 AATGGCATAGGT-TAAC-TCATG
64 AATGCCATAGGTGTTACATCATT
* * * * *
1144 AGCGTCGGGGGCAAAAAATGGCTAAAATGCCGAAGGTGTTAAATCATGAGCGTCGAGGGCTAAAA
1 AGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAACCATGAGCGTCGGGGGCCAAAA
*
1209 TCCCATAGGTGTTACATCATT
66 TGCCATAGGTGTTACATCATT
* * *
1230 AGCGTCGGGGCCAAAAAATGGCTAAAATGCCAAA-G-GTTAACCACCATAAGCGTCGGGGGCCAA
1 AGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAA--ACCATGAGCGTCGGGGGCCAA
1293 AA
64 AA
1295 ATGTCCCCAA
Statistics
Matches: 684, Mismatches: 119, Indels: 101
0.76 0.13 0.11
Matches are distributed among these distances:
83 4 0.01
84 54 0.08
85 50 0.07
86 317 0.46
87 83 0.12
88 50 0.07
89 4 0.01
90 52 0.08
91 1 0.00
92 5 0.01
94 3 0.00
95 6 0.01
96 24 0.04
97 3 0.00
98 28 0.04
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (86 bp):
AGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAACCATGAGCGTCGGGGGCCAAAA
TGCCATAGGTGTTACATCATT
Found at i:786 original size:173 final size:174
Alignment explanation
Indices: 352--940 Score: 658
Period size: 173 Copynumber: 3.4 Consensus size: 174
342 GGTTAACCAC
* * * * * * *
352 CATGAGCGTCGGGGGCCAAAAATGGTCAAAATGCCAAAGATGTTACACCCTGAGCGTTGGGGG-C
1 CATGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAATCATGAGCGTCGGGGGCC
* * * * * *
416 AAAATGCCATAGGTGTTACGTCATTAGTGTCGGGGGCAAAAAATGACTAAAATGGCAAAGGTTAA
66 AAAATGCCATAGGTGTTACATCATTAGCGTCGGGGACAAAAAATGGCTAAAATGACAAAGGTT-T
*
481 CCACCATGAGCGTCGGGGGCCAAAAT-GCCGATAAGGTGTTACAT
130 CCACCATGAGCGTCGGGGGCCAAAATGGACGATAAGGTGTTACAT
* * * * *
525 CATTTGAGCGTCGGGGGTAAAAAATGGCCAAAATGCCCAATGTGTTAAATCATTAGCGTCGTGGG
1 CA--TGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAATCATGAGCGTCGGGGG
* * *
590 CCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGACAAGAAATGGCCAAAATGCCAAAGGTC
64 CCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGACAAAAAATGGCTAAAATGACAAAGGT-
* * **
655 TTCCACCATGAGTGTCGAGGGCCAAAATGGAC-ATAA-GTGTTTTAT
128 TTCCACCATGAGCGTCGGGGGCCAAAATGGACGATAAGGTGTTACAT
* * * * *
700 CATGAGGGTCGTGGGCAAAAAATGCCCAAAATGCCGAAGGTATTAAATCATGAGCGTCGGGGGCC
1 CATGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAATCATGAGCGTCGGGGGCC
* * *
765 AAAATGTCATAGGTGTTACATCATAAGCGTCGGGGGA-AAAAAATGGCTAAAACGACAAAGGTGT
66 AAAATGCCATAGGTGTTACATCATTAGCGTC-GGGGACAAAAAATGGCTAAAATGACAAAGGT-T
* *
829 TACACCATGAGCGTCGGGGGCCAAAAT-G-CTAT-AGGTGTTACAT
129 TCCACCATGAGCGTCGGGGGCCAAAATGGACGATAAGGTGTTACAT
* * * * * *
872 AATAAGCGTCGGGGGTAAAAAATGGCTAAAATGCCAAA-G-GTTAACCACCATGAGCGTTGGGGG
1 CATGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAA--ATCATGAGCGTCGGGGG
935 CCAAAA
64 CCAAAA
941 ATGACAAAAA
Statistics
Matches: 349, Mismatches: 57, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
170 4 0.01
171 3 0.01
172 61 0.17
173 131 0.38
174 5 0.01
175 58 0.17
176 84 0.24
177 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.20
Consensus pattern (174 bp):
CATGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTAAATCATGAGCGTCGGGGGCC
AAAATGCCATAGGTGTTACATCATTAGCGTCGGGGACAAAAAATGGCTAAAATGACAAAGGTTTC
CACCATGAGCGTCGGGGGCCAAAATGGACGATAAGGTGTTACAT
Found at i:788 original size:38 final size:38
Alignment explanation
Indices: 737--886 Score: 113
Period size: 38 Copynumber: 3.7 Consensus size: 38
727 AAAATGCCGA
* * *
737 AGGTATTAAATCATGAGCGTCGGGGGCCAAAATGTCAT
1 AGGTGTTACATCATAAGCGTCGGGGGCCAAAATGTCAT
** *
775 AGGTGTTACATCATAAGCGTCGGGGGAAAAAAATGGCTAAAACGACAA
1 AGGTGTTACATCATAAGCGTCGGGGG-CCAAAAT-G-T-------CAT
* *
823 AGGTGTTACACCATGAGCGTCGGGGGCCAAAATG-CTAT
1 AGGTGTTACATCATAAGCGTCGGGGGCCAAAATGTC-AT
*
861 AGGTGTTACATAATAAGCGTCGGGGG
1 AGGTGTTACATCATAAGCGTCGGGGG
887 TAAAAAATGG
Statistics
Matches: 87, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
37 1 0.01
38 47 0.54
39 5 0.06
40 1 0.01
41 1 0.01
46 1 0.01
47 5 0.06
48 26 0.30
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.21
Consensus pattern (38 bp):
AGGTGTTACATCATAAGCGTCGGGGGCCAAAATGTCAT
Found at i:943 original size:134 final size:133
Alignment explanation
Indices: 786--1180 Score: 533
Period size: 134 Copynumber: 2.9 Consensus size: 133
776 GGTGTTACAT
** * * * *
786 CATAAGCGTCGGGGGAAAAAAATGGCTAAAACGACAAAGGTGTTACACCATGAGCGTCGGGGGCC
1 CATAAGCGTCGGGGGCCAAAAATGACAAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGGCC
* *
851 AAAATGCTATAGGTGTTACATAATAAGCGTCGGGGGTAAAAAATGGCTAAAATGCCAAAGGTTAA
66 AAAATGC-ATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATGCCAAAGGTTAA
916 CCAC
130 CCAC
* * * * *
920 CATGAGCGTTGGGGGCCAAAAATGACAAAAATTCCAAAGGTATTACATCATGAGCGTCGGGGGCC
1 CATAAGCGTCGGGGGCCAAAAATGACAAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGGCC
* * * *
985 AAAATGCCATAGTTGTTACATCATTAGCGTCAGGGCCAAAAAATGGCTAAAATGCCAAAGGTTAA
66 AAAATG-CATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATGCCAAAGGTTAA
1050 CCAC
130 CCAC
* *
1054 CATAAGCGTCGGGGGCCAAAAATGACCCCAAAATGCCAAAGGTGTTACACCATGAGCGTTGGGGG
1 CATAAGCGTCGGGGGCCAAAAATGA--CAAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGG
* * *
1119 CCAAAATGGCATAGGT-TAAC-TCATGAGCGTCGGGGGCAAAAAATGGCTAAAATGCCGAAGGT
64 CCAAAAT-GCATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATGCCAAAGGT
1181 GTTAAATCAT
Statistics
Matches: 227, Mismatches: 30, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
134 176 0.78
135 4 0.02
136 46 0.20
137 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.18
Consensus pattern (133 bp):
CATAAGCGTCGGGGGCCAAAAATGACAAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGGCC
AAAATGCATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATGCCAAAGGTTAAC
CAC
Found at i:1123 original size:38 final size:36
Alignment explanation
Indices: 1081--1160 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
1071 AAAAATGACC
*
1081 CCAAAATGCCAAAGGTGTTACAC-CATGAGCGTTGGGGG
1 CCAAAATGCCAAA-G-GTTA-ACTCATGAGCGTCGGGGG
* *
1119 CCAAAATGGCATAGGTTAACTCATGAGCGTCGGGGG
1 CCAAAATGCCAAAGGTTAACTCATGAGCGTCGGGGG
*
1155 CAAAAA
1 CCAAAA
1161 ATGGCTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
35 2 0.05
36 23 0.62
37 1 0.03
38 11 0.30
ACGTcount: A:0.33, C:0.20, G:0.30, T:0.17
Consensus pattern (36 bp):
CCAAAATGCCAAAGGTTAACTCATGAGCGTCGGGGG
Found at i:1146 original size:220 final size:220
Alignment explanation
Indices: 920--1341 Score: 709
Period size: 220 Copynumber: 1.9 Consensus size: 220
910 GGTTAACCAC
* * * * *
920 CATGAGCGTTGGGGGCCAAAAATGACAAAAATTCCAAAGGTATTACATCATGAGCGTCGGGGGCC
1 CATGAGCGTCGGGGGCAAAAAATGACAAAAATGCCAAAGGTATTAAATCATGAGCGTCGAGGGCC
* *
985 AAAATGCCATAGTTGTTACATCATTAGCGTCAGGGCCAAAAAATGGCTAAAATGCCAAAGGTTAA
66 AAAATCCCATAGGTGTTACATCATTAGCGTCAGGGCCAAAAAATGGCTAAAATGCCAAAGGTTAA
*
1050 CCACCATAAGCGTCGGGGGCCAAAAATGACCCCAAAATGCCAAAGGTGTTACACCATGAGCGTTG
131 CCACCATAAGCGTCGGGGGCCAAAAATGACCCCAAAATGCCAAAGGTGTTACACCATGAGCGTCG
1115 GGGGCCAAAATGGCATAGGTTAACT
196 GGGGCCAAAATGGCATAGGTTAACT
* * * * *
1140 CATGAGCGTCGGGGGCAAAAAATGGCTAAAATGCCGAAGGTGTTAAATCATGAGCGTCGAGGGCT
1 CATGAGCGTCGGGGGCAAAAAATGACAAAAATGCCAAAGGTATTAAATCATGAGCGTCGAGGGCC
*
1205 AAAATCCCATAGGTGTTACATCATTAGCGTCGGGGCCAAAAAATGGCTAAAATGCCAAAGGTTAA
66 AAAATCCCATAGGTGTTACATCATTAGCGTCAGGGCCAAAAAATGGCTAAAATGCCAAAGGTTAA
*
1270 CCACCATAAGCGTCGGGGGCCAAAAATGTCCCCAAAATGCCAAAGGTGTTACACCATGAGCGTCG
131 CCACCATAAGCGTCGGGGGCCAAAAATGACCCCAAAATGCCAAAGGTGTTACACCATGAGCGTCG
1335 GGGGCCA
196 GGGGCCA
1342 TGAGTTTCTG
Statistics
Matches: 187, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
220 187 1.00
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (220 bp):
CATGAGCGTCGGGGGCAAAAAATGACAAAAATGCCAAAGGTATTAAATCATGAGCGTCGAGGGCC
AAAATCCCATAGGTGTTACATCATTAGCGTCAGGGCCAAAAAATGGCTAAAATGCCAAAGGTTAA
CCACCATAAGCGTCGGGGGCCAAAAATGACCCCAAAATGCCAAAGGTGTTACACCATGAGCGTCG
GGGGCCAAAATGGCATAGGTTAACT
Found at i:1219 original size:38 final size:37
Alignment explanation
Indices: 1163--1245 Score: 105
Period size: 38 Copynumber: 2.2 Consensus size: 37
1153 GGCAAAAAAT
*
1163 GGCTAAAATGCCGAAGGTGTTAAATCATGAGCGTCGAG
1 GGCTAAAATGCCCAAGGTGTTAAATCATGAGCGTCG-G
* *
1201 GGCTAAAAT-CCCATAGGTGTTACATCATTAGCGTCGG
1 GGCTAAAATGCCCA-AGGTGTTAAATCATGAGCGTCGG
*
1238 GGCCAAAA
1 GGCTAAAA
1246 AATGGCTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
37 11 0.28
38 29 0.73
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (37 bp):
GGCTAAAATGCCCAAGGTGTTAAATCATGAGCGTCGG
Found at i:3553 original size:37 final size:37
Alignment explanation
Indices: 3455--3568 Score: 122
Period size: 37 Copynumber: 3.1 Consensus size: 37
3445 GCAATAAAAT
* *
3455 GGCCAAAATTCCA-AAGGTGTTACACCATAAGCGTCGG
1 GGCCAAAATGCCATAA-GTGTTACATCATAAGCGTCGG
* * * * *
3492 GAGACAAAAGGCCATAGGTGTTACATCATTAGTGTCGG
1 G-GCCAAAATGCCATAAGTGTTACATCATAAGCGTCGG
* *
3530 GGCCAAAATGCCATAAGTATTACATCATGAGCGTCGG
1 GGCCAAAATGCCATAAGTGTTACATCATAAGCGTCGG
3567 GG
1 GG
3569 GAATAAAATG
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
37 33 0.53
38 28 0.45
39 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (37 bp):
GGCCAAAATGCCATAAGTGTTACATCATAAGCGTCGG
Found at i:3602 original size:48 final size:48
Alignment explanation
Indices: 3530--6009 Score: 461
Period size: 48 Copynumber: 56.7 Consensus size: 48
3520 TTAGTGTCGG
3530 GGCCAAAATGCCATAA-GT-ATTACATCATGAGCGTCGGGGG-AATAAAAT
1 GGCCAAAATGCCA-AAGGTGA-TACATCATGAGCGTCGGGGGCAA-AAAAT
* ** *
3578 GGCCAAAATTCCAAAGGTGATACATCAAAAGCCTCGGGGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * * *
3626 GGCTAAAATGCCGAAGGTGTTAAATCATGAGCGTC--AGG------A-
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
3665 -GCTAAAATGCCATAGGTGTTACATCATGAGCGTC----G------AG
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
3702 GGCCAAAATTCCATAGGTGTTACATCATTAGCGTCGGGGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
3750 GGACAAAATGCCAAAGGTGTTACAACATGAGCGTC--GTG--------
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
3788 GGCCAAAATACCATAGGTGTTACATCAT-ATGCGTCGGGGGTAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGA-GCGTCGGGGGCAAAAAAT
* * * * *
3836 GGCTAAAATGCCAAAGGTTA-ACTAGCATGAGCGTCGGGGGCCAAAACT
1 GGCCAAAATGCCAAAGGTGATAC-ATCATGAGCGTCGGGGGCAAAAAAT
* * *
3884 TGCCAAAATGCTAAAGGTGTTACA-CTATGAGCGTC---GG-------T
1 GGCCAAAATGCCAAAGGTGATACATC-ATGAGCGTCGGGGGCAAAAAAT
* * ** * *
3922 -GCCAAAATGGCATAGGTCTTACATAATGAGCGTCGGGAGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* *
3969 AGCCAAAATGCCAAAGGTGTTACATCATGAGCGTC--GGG-------T
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * * *
4008 -GCCAAAATGCCATAGGTGTTACATCATTAGCGTC-AGGGCAAAGAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * * * * *
4054 AGCTAAAATGCCAAAGGTTA-ACCAGCATGAGCATCGGGGGCCAAAACT
1 GGCCAAAATGCCAAAGGTGATA-CATCATGAGCGTCGGGGGCAAAAAAT
* * *
4102 GGCCAAAATGCTAAAGGTGTTACACCATGAGCGTCGGGGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* *
4150 GGCCAAAATGCCAAAGGTG-TCACACCATGAGCGT-TGGGG----AAA-
1 GGCCAAAATGCCAAAGGTGAT-ACATCATGAGCGTCGGGGGCAAAAAAT
** * *
4192 ----AAAATGCCGTAGGTGTTACATCATGAGCGTCGAGGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * ** *
4236 GGCTAAAATGCCAAATGTGTTACGCCATAAGCGTC-GGGGC-AAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
4282 -G-----A---CATAGGTGTTACATGATGAGCGTCGGGGGCAGAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
4321 AGCTAAAATGCCAAAGGTAAATTAC--CATGAGCGTCGGGGGCCAAAAAT
1 GGCCAAAATGCCAAAGGT-GA-TACATCATGAGCGTCGGGGGCAAAAAAT
* * * * **
4369 GGCCCAAATGCCAAAGGTGTTACACCATAAGCGT------C---AAGG
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * * * * **
4408 GGCCAAAATGCCATAGGTGTTATATCATTAGTGTTGGGGGCTGAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
4456 TGCTAAAATTCCAAAGGTG-TAACA-CTATAAGCGT------C----AA-
1 GGCCAAAATGCCAAAGGTGAT-ACATC-ATGAGCGTCGGGGGCAAAAAAT
* * * *
4493 GGACCAAAATACTATAA-GTGTTAAATCATGAGCGTCGGGGGCAAAAAAT
1 GG-CCAAAATGCCA-AAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * * *
4542 GACTAAAATGCCAAAGGTTA-ACCACCATGAGCGTCGGGGGCCAAAAAT
1 GGCCAAAATGCCAAAGGTGATA-CATCATGAGCGTCGGGGGCAAAAAAT
* * * * * * *
4590 GACCAAAACGCCAAAAGAGTTACA-CAATGAACGT--TGGG------A-
1 GGCCAAAATGCCAAAGGTGATACATC-ATGAGCGTCGGGGGCAAAAAAT
* * *
4629 -GACAAAATGCCATAGGTGTTACATCATGAGCGTC--GGG--------
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * * * * *
4666 GGCCAAAATGCCATAGATGTTACATAAGGAGGGTCGAGGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * * * *
4714 GGTCAAAATGACGAAGGTGTTATAGCATGAGCGTC--GGG--------
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
4752 GGCCAAAATACCATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * * *
4800 TGCCATAATGCCGAAGGTGTTAAATCATGAGCGTC--GGG------A-
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
4839 -GTCAAAATGCCATAGGTGTTACA-CTATTAGCGTC--GGG--------
1 GGCCAAAATGCCAAAGGTGATACATC-ATGAGCGTCGGGGGCAAAAAAT
** * * *
4876 GGCCAAAATGCCGTAGGTGTTAAATCATGAGCGTCGAGGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
4924 GGCAAAAATGCCAAAGGTGTTACACCATAAGCGTCGGGGGC-AAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * *
4971 -G------T--CATAGGTGTTACATGC-TTAGCGTCGGGGGC-AAAAAT
1 GGCCAAAATGCCAAAGGTGATACAT-CATGAGCGTCGGGGGCAAAAAAT
* * * * * * *
5009 GGCTAAAATGCTAAAGGTTA-ACCACCATGGGCATCGGGGGCCAAAAAT
1 GGCCAAAATGCCAAAGGTGATA-CATCATGAGCGTCGGGGGCAAAAAAT
* * * **
5057 GGCTAAAATGCCAAAGGTGTTACACCATGAGCGTC-GGGGCCGAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
5104 -GCC---AT----TA-GTGTTACATCATTAGTGTCGGGGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * ** * * *
5143 GGCTAAAATG-CAATAGGTTA-ACAAAAATGATCGTCGAGGGCCAAAAAT
1 GGCCAAAATGCCAA-AGGTGATAC-ATCATGAGCGTCGGGGGCAAAAAAT
* * *
5191 GGCCAAAACGCCAAATGTGTTACATCATGAGCGTCGGGGG-AAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
** * *
5238 GGATAAAATGCCAAATGTGTTACA-CAATGAGCGTC--GGG--------
1 GGCCAAAATGCCAAAGGTGATACATC-ATGAGCGTCGGGGGCAAAAAAT
* * * * *
5276 GGCCAAAATACCATAGGTGTTACATCATAAGCGTCGGGGGAAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * * * * * * * **
5324 TGCCAAAATGCCGAAGGTGTTAACCACCATGAGTGTTGGTGGCCATACCT
1 GGCCAAAATGCCAAAGGTGAT-A-CATCATGAGCGTCGGGGGCAAAAAAT
* * *
5374 GGCCAAAATGCCAAAGGTGTTACACCATGAGCGTC-GGGGC-CAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
5420 -GCC---AT----AA-GT-ATTACATCATGAGCGTCGGGGGC-AAAAAT
1 GGCCAAAATGCCAAAGGTGA-TACATCATGAGCGTCGGGGGCAAAAAAT
* * * *
5458 -G------T--CATAGGTGTTACATCATGAGCGTCGGGTGC-CAAAA-
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* ** **
5495 GGCC---AT----AA-GTGTTACATCATTCGCGTTAGGGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
** * * *
5535 GGTTAAAATGCCAAAGGTTA-AGCAGCATGAGCGTCGGGGGCCAAAAAT
1 GGCCAAAATGCCAAAGGTGATA-CATCATGAGCGTCGGGGGCAAAAAAT
* * *
5583 GGCCAAAATGCTAAAGGTGTTACAGCATGAGCGTC--GGG--------
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * * * *
5621 GGCCATAATGCCATAGGTGTTACATCTTGACCGTTGGGGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * **
5669 GGCCAAAATGCCAAAGGTGTTACA-CAATAAGCAAC-GGGGC-AAAAAT
1 GGCCAAAATGCCAAAGGTGATACATC-ATGAGCGTCGGGGGCAAAAAAT
* * *
5715 -G-----A---CATAGGTGTTACATCATGAGCGTCGGTGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * **
5754 GGCTAAAATGCCAAAGGTTA-ACCACCATGAGCGTCGGGGGTTAAAAAT
1 GGCCAAAATGCCAAAGGTGATA-CATCATGAGCGTCGGGGGCAAAAAAT
* * * *
5802 GGCCAAAATTCCAAAGGTGTTACACCATAAGCGTC--GGG------A-
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
* * * * * * *
5841 -GACAAAATGCCATAGGTGTTACATCATTAGTGACGGGGGC-CAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
5887 -GCC---AT----AA-GT-ATTACATCATGAGCGTCGGGGG-AATAAAAT
1 GGCCAAAATGCCAAAGGTGA-TACATCATGAGCGTCGGGGGCAA-AAAAT
** *
5926 GGCCAAAATGCCAAAGGTGATACATCACAAGCCTCGGGGGGCAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTC-GGGGGCAAAAAAT
* * * * *
5975 TGCTAAAATGCTGAAA-GTGTTAAATCATGAGCGTC
1 GGCCAAAATGC-CAAAGGTGATACATCATGAGCGTC
6010 AGGAGCTAAA
Statistics
Matches: 1805, Mismatches: 368, Indels: 517
0.67 0.14 0.19
Matches are distributed among these distances:
35 1 0.00
36 2 0.00
37 84 0.05
38 529 0.29
39 80 0.04
40 37 0.02
41 1 0.00
42 5 0.00
43 16 0.01
44 1 0.00
45 15 0.01
46 48 0.03
47 136 0.08
48 754 0.42
49 53 0.03
50 43 0.02
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (48 bp):
GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGCAAAAAAT
Found at i:3682 original size:38 final size:38
Alignment explanation
Indices: 3626--3832 Score: 170
Period size: 38 Copynumber: 5.2 Consensus size: 38
3616 GGCAAAAAAT
*
3626 GGCTAAAATGCCGA-AGGTGTTAAATCATGAGCGTC-AG
1 GGCTAAAATGCC-ATAGGTGTTACATCATGAGCGTCGAG
3663 GAGCTAAAATGCCATAGGTGTTACATCATGAGCGTCGAG
1 G-GCTAAAATGCCATAGGTGTTACATCATGAGCGTCGAG
* * * *
3702 GGCCAAAATTCCATAGGTGTTACATCATTAGCGTCGGG
1 GGCTAAAATGCCATAGGTGTTACATCATGAGCGTCGAG
* * *
3740 GGCAAAAAATGGACAAAATGCCAAAGGTGTTACAACATGAGCGTCGTG
1 GGC------T----AAAATGCCATAGGTGTTACATCATGAGCGTCGAG
* *
3788 GGCCAAAATACCATAGGTGTTACATCAT-ATGCGTCG-G
1 GGCTAAAATGCCATAGGTGTTACATCATGA-GCGTCGAG
*
3825 GGGTAAAA
1 GGCTAAAA
3833 AATGGCTAAA
Statistics
Matches: 139, Mismatches: 17, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
37 10 0.07
38 94 0.68
39 3 0.02
48 32 0.23
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.22
Consensus pattern (38 bp):
GGCTAAAATGCCATAGGTGTTACATCATGAGCGTCGAG
Found at i:3729 original size:172 final size:172
Alignment explanation
Indices: 3412--3773 Score: 496
Period size: 172 Copynumber: 2.1 Consensus size: 172
3402 ACGACCGATC
* * * *
3412 AATGCCATAGGTGTTACATCACAAGCGTCGGGGGCAATAAAATGGCCAAAATTCCAAAGGTGTTA
1 AATGCCAAAGGTGTTACATCAAAAGCCTCGGGGGCAATAAAATGGCCAAAATGCCAAAGGTGTTA
* * * *
3477 CACCATAAGCGTCGGGAGACAAAAGGCCATAGGTGTTACATCATTAGTGTCGGGGCCAAAATGCC
66 AACCATAAGCGTCAGGAGACAAAAGGCCATAGGTGTTACATCATGAGCGTCGGGGCCAAAATGCC
*
3542 ATAAGTATTACATCATGAGCGTCGGGGG-AATAAAATGGCCAA
131 ATAAGTATTACATCATGAGCGTCGGGGGCAA-AAAATGGACAA
* * * *
3584 AATTCCAAAGGTGATACATCAAAAGCCTCGGGGGCAA-AAAATGGCTAAAATGCCGAAGGTGTTA
1 AATGCCAAAGGTGTTACATCAAAAGCCTCGGGGGCAATAAAATGGCCAAAATGCCAAAGGTGTTA
* * * *
3648 AATCATGAGCGTCAGGAG-CTAAAATGCCATAGGTGTTACATCATGAGCGTCGAGGGCCAAAATT
66 AACCATAAGCGTCAGGAGAC-AAAAGGCCATAGGTGTTACATCATGAGCGTCG-GGGCCAAAATG
* * *
3712 CCATAGGTGTTACATCATTAGCGTCGGGGGCAAAAAATGGACAA
129 CCATAAGTATTACATCATGAGCGTCGGGGGCAAAAAATGGACAA
3756 AATGCCAAAGGTGTTACA
1 AATGCCAAAGGTGTTACA
3774 ACATGAGCGT
Statistics
Matches: 165, Mismatches: 22, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
170 1 0.01
171 67 0.41
172 95 0.58
173 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20
Consensus pattern (172 bp):
AATGCCAAAGGTGTTACATCAAAAGCCTCGGGGGCAATAAAATGGCCAAAATGCCAAAGGTGTTA
AACCATAAGCGTCAGGAGACAAAAGGCCATAGGTGTTACATCATGAGCGTCGGGGCCAAAATGCC
ATAAGTATTACATCATGAGCGTCGGGGGCAAAAAATGGACAA
Found at i:3769 original size:86 final size:86
Alignment explanation
Indices: 3665--3881 Score: 314
Period size: 86 Copynumber: 2.5 Consensus size: 86
3655 AGCGTCAGGA
* * *
3665 GCTAAAATGCCATAGGTGTTACATCATGAGCGTCGAGGGCCAAAATTCCATAGGTGTTACATCAT
1 GCTAAAATGCCAAAGGTGTTACAACATGAGCGTCGAGGGCCAAAATACCATAGGTGTTACATCAT
3730 -TAGCGTCGGGGGCAAAAAATG
66 AT-GCGTCGGGGGCAAAAAATG
*
3751 GAC-AAAATGCCAAAGGTGTTACAACATGAGCGTCGTGGGCCAAAATACCATAGGTGTTACATCA
1 G-CTAAAATGCCAAAGGTGTTACAACATGAGCGTCGAGGGCCAAAATACCATAGGTGTTACATCA
*
3815 TATGCGTCGGGGGTAAAAAATG
65 TATGCGTCGGGGGCAAAAAATG
* * *
3837 GCTAAAATGCCAAAGGT-TAACTAGCATGAGCGTCGGGGGCCAAAA
1 GCTAAAATGCCAAAGGTGTTAC-AACATGAGCGTCGAGGGCCAAAA
3882 CTTGCCAAAA
Statistics
Matches: 119, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
85 4 0.03
86 113 0.95
87 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (86 bp):
GCTAAAATGCCAAAGGTGTTACAACATGAGCGTCGAGGGCCAAAATACCATAGGTGTTACATCAT
ATGCGTCGGGGGCAAAAAATG
Found at i:3802 original size:124 final size:124
Alignment explanation
Indices: 3578--3823 Score: 347
Period size: 124 Copynumber: 2.0 Consensus size: 124
3568 GGAATAAAAT
*
3578 GGCCAAAATTCCAAAGGTGATACATCAAAAGCCTCGGGGGCAAAAAATGGCTAAAATGCCGAAGG
1 GGCCAAAATTCCAAAGGTGATACATCAAAAGCCTCGGGGGCAAAAAATGGCTAAAATGCCAAAGG
* *
3643 TGTTAAATCATGAGCGTCAGGAGCTAAAATGCCATAGGTGTTACATCATGA-GCGTCGAG
66 TGTTAAATCATGAGCGTCAGGAGCCAAAATACCATAGGTGTTACATCAT-ATGCGTCGAG
* * ** *
3702 GGCCAAAATTCCATAGGTGTTACATCATTAGCGTCGGGGGCAAAAAATGGAC-AAAATGCCAAAG
1 GGCCAAAATTCCAAAGGTGATACATCAAAAGCCTCGGGGGCAAAAAATGG-CTAAAATGCCAAAG
*
3766 GTGTTACAA-CATGAGCGTC-GTGGGCCAAAATACCATAGGTGTTACATCATATGCGTCG
65 GTGTTA-AATCATGAGCGTCAG-GAGCCAAAATACCATAGGTGTTACATCATATGCGTCG
3824 GGGGTAAAAA
Statistics
Matches: 109, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
123 2 0.02
124 104 0.95
125 3 0.03
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (124 bp):
GGCCAAAATTCCAAAGGTGATACATCAAAAGCCTCGGGGGCAAAAAATGGCTAAAATGCCAAAGG
TGTTAAATCATGAGCGTCAGGAGCCAAAATACCATAGGTGTTACATCATATGCGTCGAG
Found at i:3927 original size:37 final size:37
Alignment explanation
Indices: 3884--3957 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 37
3874 GGCCAAAACT
*
3884 TGCCAAAAT-GCTAAAGGTGTTACACT-ATGAGCGTCGG
1 TGCCAAAATGGC-AAAGGTCTTACA-TAATGAGCGTCGG
*
3921 TGCCAAAATGGCATAGGTCTTACATAATGAGCGTCGG
1 TGCCAAAATGGCAAAGGTCTTACATAATGAGCGTCGG
3958 GAGCAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 1 0.03
37 30 0.91
38 2 0.06
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (37 bp):
TGCCAAAATGGCAAAGGTCTTACATAATGAGCGTCGG
Found at i:3983 original size:133 final size:134
Alignment explanation
Indices: 3703--4014 Score: 371
Period size: 133 Copynumber: 2.3 Consensus size: 134
3693 AGCGTCGAGG
* * * * * *
3703 GCCAAAATTCCATAGGTGTTACATCATTAGCGTCGGGGGCAAAAAATGGACAAAATGCCAAAGGT
1 GCCAAAATGCCAAAGGTGTAACAGCATGAGCGTCGGGGGCCAAAAATGGACAAAATGCCAAAGGT
* * * *
3768 GTTACAACATGAGCGTCGTGGGCCAAAATACCATAGGTGTTACATCATATGCGTCGGGGGTAAAA
66 GTTACAACATGAGCGTCGTGGGCCAAAATACCATAGGTCTTACATAATATGCGTCGGGAGCAAAA
*
3833 AATG
131 AATA
* * * * *
3837 GCTAAAATGCCAAAGGT-TAACTAGCATGAGCGTCGGGGGCCAAAACTTGCCAAAATGCTAAAGG
1 GCCAAAATGCCAAAGGTGTAAC-AGCATGAGCGTCGGGGGCCAAAAATGGACAAAATGCCAAAGG
* **
3901 TGTTAC-ACTATGAGCGTCG-GTGCCAAAATGGCATAGGTCTTACATAATGA-GCGTCGGGAGCA
65 TGTTACAAC-ATGAGCGTCGTGGGCCAAAATACCATAGGTCTTACATAAT-ATGCGTCGGGAGCA
3963 AAAAATA
128 AAAAATA
* * *
3970 GCCAAAATGCCAAAGGTGTTACATCATGAGCGTCGGGTGCCAAAA
1 GCCAAAATGCCAAAGGTGTAACAGCATGAGCGTCGGGGGCCAAAA
4015 TGCCATAGGT
Statistics
Matches: 151, Mismatches: 23, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
133 82 0.54
134 69 0.46
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (134 bp):
GCCAAAATGCCAAAGGTGTAACAGCATGAGCGTCGGGGGCCAAAAATGGACAAAATGCCAAAGGT
GTTACAACATGAGCGTCGTGGGCCAAAATACCATAGGTCTTACATAATATGCGTCGGGAGCAAAA
AATA
Found at i:3985 original size:85 final size:85
Alignment explanation
Indices: 3861--4366 Score: 498
Period size: 85 Copynumber: 5.8 Consensus size: 85
3851 GGTTAACTAG
* * * * * *
3861 CATGAGCGTCGGGGGCCAAAACTTGCCAAAATGCTAAAGGTGTTACACTATGAGCGTCGGTGCCA
1 CATGAGCGTCGGGGGCAAAAAATAGCCAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCA
* *
3926 AAATGGCATAGGTCTTACAT
66 AAATGCCATAGGTGTTACAT
* * *
3946 AATGAGCGTCGGGAGCAAAAAATAGCCAAAATGCCAAAGGTGTTACATCATGAGCGTCGGGTGCC
1 CATGAGCGTCGGGGGCAAAAAATAGCCAAAATGCCAAAGGTGTTACACCATGAGCGTCGGG-GCC
4011 AAAATGCCATAGGTGTTACAT
65 AAAATGCCATAGGTGTTACAT
* * * * * * *
4032 CATTAGCGTC-AGGGCAAAGAATAGCTAAAATGCCAAAGGT-TAACCAGCATGAGCATCGGGGGC
1 CATGAGCGTCGGGGGCAAAAAATAGCCAAAATGCCAAAGGTGTTA-CACCATGAGCGTC-GGGGC
*
4095 CAAAACTGGCCAAAATGCTAAAGGTGTTACAC
64 CAAAA-T-GCC---A---T--AGGTGTTACAT
* * * **
4127 CATGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTCACACCATGAGCGTTGGGGAAA
1 CATGAGCGTCGGGGGCAAAAAATAGCCAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGG-CC
*
4192 AAAATGCCGTAGGTGTTACAT
65 AAAATGCCATAGGTGTTACAT
* * * * * * *
4213 CATGAGCGTCGAGGGCAAAAAATGGCTAAAATGCCAAATGTGTTACGCCATAAGCGTCGGGGCAA
1 CATGAGCGTCGGGGGCAAAAAATAGCCAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCA
*
4278 AAATGACATAGGTGTTACAT
66 AAATGCCATAGGTGTTACAT
* * * *
4298 GATGAGCGTCGGGGGCAGAAAATAGCTAAAATGCCAAAGGTAAATT--ACCATGAGCGTCGGGGG
1 CATGAGCGTCGGGGGCAAAAAATAGCCAAAATGCCAAAGGT--GTTACACCATGAGCGTC-GGGG
4361 CCAAAA
63 CCAAAA
4367 ATGGCCCAAA
Statistics
Matches: 349, Mismatches: 53, Indels: 37
0.79 0.12 0.08
Matches are distributed among these distances:
84 2 0.01
85 162 0.46
86 108 0.31
87 5 0.01
88 1 0.00
90 1 0.00
93 1 0.00
94 3 0.01
95 24 0.07
96 40 0.11
97 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (85 bp):
CATGAGCGTCGGGGGCAAAAAATAGCCAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCA
AAATGCCATAGGTGTTACAT
Found at i:4109 original size:181 final size:182
Alignment explanation
Indices: 3922--4250 Score: 484
Period size: 181 Copynumber: 1.8 Consensus size: 182
3912 GAGCGTCGGT
* *
3922 GCCAAAATGGC-ATAGGTCTTACATAATGAGCGTCGGGAGCAAAAAATAGCCAAAATGCCAAAGG
1 GCCAAAAT-GCTAAAGGTCTTACACAATGAGCGTCGGGAGCAAAAAATAGCCAAAATGCCAAAGG
* * ** *
3986 TGTTACATCATGAGCGTCGGGTG-CCAAAATGCCATAGGTGTTACATCATTAGCGTC-AGGGCAA
65 TGTCACACCATGAGCGTCGGG-GAAAAAAATGCCATAGGTGTTACATCATGAGCGTCGAGGGCAA
*
4049 AGAATAGCTAAAATGCCAAAGGTTAACCAGCATGAGCATCGGGGGCCAAAACTG
129 AAAATAGCTAAAATGCCAAAGGTTAACCAGCATGAGCATCGGGGGCCAAAACTG
* * * *
4103 GCCAAAATGCTAAAGGTGTTACACCATGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGT
1 GCCAAAATGCTAAAGGTCTTACACAATGAGCGTCGGGAGCAAAAAATAGCCAAAATGCCAAAGGT
* *
4168 GTCACACCATGAGCGTTGGGGAAAAAAATGCCGTAGGTGTTACATCATGAGCGTCGAGGGCAAAA
66 GTCACACCATGAGCGTCGGGGAAAAAAATGCCATAGGTGTTACATCATGAGCGTCGAGGGCAAAA
*
4233 AATGGCTAAAATGCCAAA
131 AATAGCTAAAATGCCAAA
4251 TGTGTTACGC
Statistics
Matches: 130, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
180 3 0.02
181 102 0.78
182 25 0.19
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (182 bp):
GCCAAAATGCTAAAGGTCTTACACAATGAGCGTCGGGAGCAAAAAATAGCCAAAATGCCAAAGGT
GTCACACCATGAGCGTCGGGGAAAAAAATGCCATAGGTGTTACATCATGAGCGTCGAGGGCAAAA
AATAGCTAAAATGCCAAAGGTTAACCAGCATGAGCATCGGGGGCCAAAACTG
Found at i:4206 original size:38 final size:39
Alignment explanation
Indices: 4154--4236 Score: 105
Period size: 38 Copynumber: 2.2 Consensus size: 39
4144 AAAAATGGCC
*
4154 AAAATGCCAAAGGTGTCACACCATGAGCGTTG-GGGAAA
1 AAAATGCCAAAGGTGTCACACCATGAGCGTCGAGGGAAA
** * * *
4192 AAAATGCCGTAGGTGTTACATCATGAGCGTCGAGGGCAA
1 AAAATGCCAAAGGTGTCACACCATGAGCGTCGAGGGAAA
4231 AAAATG
1 AAAATG
4237 GCTAAAATGC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
38 27 0.71
39 11 0.29
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (39 bp):
AAAATGCCAAAGGTGTCACACCATGAGCGTCGAGGGAAA
Found at i:4235 original size:86 final size:85
Alignment explanation
Indices: 4116--4338 Score: 311
Period size: 86 Copynumber: 2.6 Consensus size: 85
4106 AAAATGCTAA
* * *
4116 AGGTGTTACACCATGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTCACACCATGAG
1 AGGTGTTACATCATGAGCGTCGGGGGCAAAAAATGGCTAAAATGCCAAAGGTGTCACACCATAAG
* * *
4181 CGTTGGGGAAAAAAATGCCGT
66 CGTCGGGG-AAAAAATGACAT
* * * *
4202 AGGTGTTACATCATGAGCGTCGAGGGCAAAAAATGGCTAAAATGCCAAATGTGTTACGCCATAAG
1 AGGTGTTACATCATGAGCGTCGGGGGCAAAAAATGGCTAAAATGCCAAAGGTGTCACACCATAAG
*
4267 CGTCGGGGCAAAAATGACAT
66 CGTCGGGGAAAAAATGACAT
* * *
4287 AGGTGTTACATGATGAGCGTCGGGGGCAGAAAATAGCTAAAATGCCAAAGGT
1 AGGTGTTACATCATGAGCGTCGGGGGCAAAAAATGGCTAAAATGCCAAAGGT
4339 AAATTACCAT
Statistics
Matches: 121, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
85 56 0.46
86 65 0.54
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (85 bp):
AGGTGTTACATCATGAGCGTCGGGGGCAAAAAATGGCTAAAATGCCAAAGGTGTCACACCATAAG
CGTCGGGGAAAAAATGACAT
Found at i:4471 original size:135 final size:133
Alignment explanation
Indices: 3947--4473 Score: 427
Period size: 133 Copynumber: 3.9 Consensus size: 133
3937 GTCTTACATA
* * * *
3947 ATGAGCGTCG-GGAGCAAAAAATAGCCAAAATGCCAAAGGTGTTACATCATGAGCGTCGGGTGCC
1 ATGAGCGTCGAGG-GCAAAAAATGGCCAAAATGCCAAAGGTGTTACACCATAAGCGTCGGG-GCA
* * * *
4011 AAAATGCCATAGGTGTTACATCATTAGCGTC-AGGGCA-AAGAATAGCTAAAATGCCAAAGGTTA
64 AAAATGACATAGGTGTTACATCATGAGCGTCGGGGGCAGAA-AATAGCTAAAATGCCAAAGGTAA
** *
4074 ACCAGC
128 ATTACC
* * * * * *
4080 ATGAGCATCGGGGGCCAAAACTGGCCAAAATGCTAAAGGTGTTACACCATGAGCGTCGGGGGCAA
1 ATGAGCGTCGAGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTACACCATAAGCGTC-GGGGC-A
* * * *
4145 AAAATGGCCAAAATGCCAAAGGTGTCACACCATGAGCGT--TGGG--G--AA-A---AAAATGCC
64 AAAAT-G-----A---CATAGGTGTTACATCATGAGCGTCGGGGGCAGAAAATAGCTAAAATGCC
** *
4200 GTAGGT--GTTACATC
120 AAAGGTAAATTAC--C
* * *
4214 ATGAGCGTCGAGGGCAAAAAATGGCTAAAATGCCAAATGTGTTACGCCATAAGCGTCGGGGCAAA
1 ATGAGCGTCGAGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTACACCATAAGCGTCGGGGCAAA
*
4279 AATGACATAGGTGTTACATGATGAGCGTCGGGGGCAGAAAATAGCTAAAATGCCAAAGGTAAATT
66 AATGACATAGGTGTTACATCATGAGCGTCGGGGGCAGAAAATAGCTAAAATGCCAAAGGTAAATT
4344 ACC
131 ACC
* * * *
4347 ATGAGCGTCGGGGGCCAAAAATGGCCCAAATGCCAAAGGTGTTACACCATAAGCGTCAAGGGGCC
1 ATGAGCGTCGAGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTACACCATAAGCGTC--GGGGCA
* * * * * * * *
4412 AAAATGCCATAGGTGTTATATCATTAGTGTTGGGGGCTGAAAATTGCTAAAATTCCAAAGGT
64 AAAATGACATAGGTGTTACATCATGAGCGTCGGGGGCAGAAAATAGCTAAAATGCCAAAGGT
4474 GTAACACTAT
Statistics
Matches: 313, Mismatches: 52, Indels: 56
0.74 0.12 0.13
Matches are distributed among these distances:
123 19 0.06
125 3 0.01
126 1 0.00
127 1 0.00
129 2 0.01
130 1 0.00
131 1 0.00
132 7 0.02
133 119 0.38
134 71 0.23
135 63 0.20
137 1 0.00
138 2 0.01
142 3 0.01
143 19 0.06
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.19
Consensus pattern (133 bp):
ATGAGCGTCGAGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTACACCATAAGCGTCGGGGCAAA
AATGACATAGGTGTTACATCATGAGCGTCGGGGGCAGAAAATAGCTAAAATGCCAAAGGTAAATT
ACC
Found at i:4500 original size:135 final size:133
Alignment explanation
Indices: 4230--4501 Score: 321
Period size: 135 Copynumber: 2.0 Consensus size: 133
4220 GTCGAGGGCA
* * *
4230 AAAAATGGCTAAAATGCCAAATGTGTTACGCCATAAGCGTCGGGGCAAAAATGACATAGGTGTTA
1 AAAAATGGCCAAAATGCCAAAGGTGTTACACCATAAGCGTCGGGGCAAAAATGACATAGGTGTTA
* * * **
4295 CATGATGAGCGTCGGGGGCAGAAAATAGCTAAAATGCCAAAGGTAAATTACCATGAGCGTCGGGG
66 CATCATGAGCGTCGGGGGCAGAAAATAGCTAAAATGCCAAAGGTAAATCACCATAAGCGTCAAGG
*
4360 GCC
131 ACC
* * *
4363 AAAAATGGCCCAAATGCCAAAGGTGTTACACCATAAGCGTCAAGGGGCCAAAATGCCATAGGTGT
1 AAAAATGGCCAAAATGCCAAAGGTGTTACACCATAAGCGTC--GGGGCAAAAATGACATAGGTGT
* * * * * * * * *
4428 TATATCATTAGTGTTGGGGGCTGAAAATTGCTAAAATTCCAAAGGTGTAA-CACTATAAGCGTCA
64 TACATCATGAGCGTCGGGGGCAGAAAATAGCTAAAATGCCAAAGGT-AAATCACCATAAGCGTCA
4492 AGGACC
128 AGGACC
4498 AAAA
1 AAAA
4502 TACTATAAGT
Statistics
Matches: 115, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
133 37 0.32
135 76 0.66
136 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (133 bp):
AAAAATGGCCAAAATGCCAAAGGTGTTACACCATAAGCGTCGGGGCAAAAATGACATAGGTGTTA
CATCATGAGCGTCGGGGGCAGAAAATAGCTAAAATGCCAAAGGTAAATCACCATAAGCGTCAAGG
ACC
Found at i:4586 original size:86 final size:85
Alignment explanation
Indices: 4346--4587 Score: 261
Period size: 86 Copynumber: 2.8 Consensus size: 85
4336 GGTAAATTAC
* ** *
4346 CATGAGCGTCGGGGGCCAAAAATGGCCCAAATGCCAAAGGTGTTACACCATAAGCGTCAAGGGGC
1 CATGAGCGTCGGGGGCAAAAAAT-GCTAAAATGCCAAAGGTGTAACACCATAAGCGTC-AGGGGC
* * *
4411 CAAAATGCCATAGGTGTTATAT
64 CAAAATACCATAAGTGTTAAAT
* * * * * * * * *
4433 CATTAGTGTTGGGGGCTGAAAATTGCTAAAATTCCAAAGGTGTAACACTATAAGCGTCAAGGACC
1 CATGAGCGTCGGGGGC-AAAAAATGCTAAAATGCCAAAGGTGTAACACCATAAGCGTCAGGGGCC
*
4498 AAAATACTATAAGTGTTAAAT
65 AAAATACCATAAGTGTTAAAT
* *
4519 CATGAGCGTCGGGGGCAAAAAATGACTAAAATGCCAAAGGT-TAACCACCATGAGCGTCGGGGGC
1 CATGAGCGTCGGGGGCAAAAAATG-CTAAAATGCCAAAGGTGTAA-CACCATAAGCGTCAGGGGC
4583 CAAAA
64 CAAAA
4588 ATGACCAAAA
Statistics
Matches: 125, Mismatches: 27, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
85 9 0.07
86 69 0.55
87 42 0.34
88 5 0.04
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.20
Consensus pattern (85 bp):
CATGAGCGTCGGGGGCAAAAAATGCTAAAATGCCAAAGGTGTAACACCATAAGCGTCAGGGGCCA
AAATACCATAAGTGTTAAAT
Found at i:4650 original size:38 final size:38
Alignment explanation
Indices: 4608--4690 Score: 105
Period size: 38 Copynumber: 2.2 Consensus size: 38
4598 CGCCAAAAGA
* *
4608 GTTACA-CAATGAACGTTGGGAGACAAAATGCCATAGGT
1 GTTACATC-ATGAACGTCGGGAGACAAAATGCCATAGAT
* * *
4646 GTTACATCATGAGCGTCGGGGGCCAAAATGCCATAGAT
1 GTTACATCATGAACGTCGGGAGACAAAATGCCATAGAT
4684 GTTACAT
1 GTTACAT
4691 AAGGAGGGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 38 0.97
39 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.23
Consensus pattern (38 bp):
GTTACATCATGAACGTCGGGAGACAAAATGCCATAGAT
Found at i:4770 original size:38 final size:38
Alignment explanation
Indices: 4728--4921 Score: 165
Period size: 38 Copynumber: 4.8 Consensus size: 38
4718 AAAATGACGA
* * *
4728 AGGTGTTATAGCATGAGCGTCGGGGGCCAAAATACCAT
1 AGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCAT
* * *
4766 AGGTGTTACATCATAAGCGTCGGGGGCAAAAAATTGCCATAAT
1 AGGTGTTAAATCATGAGCGTCGGGGGC-CAAAA-TGCC---AT
* *
4809 GCCGAAGGTGTTAAATCATGAGCGTCGGGAGTCAAAATGCCAT
1 -----AGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCAT
* * *
4852 AGGTGTTACA-CTATTAGCGTCGGGGGCCAAAATGCCGT
1 AGGTGTTAAATC-ATGAGCGTCGGGGGCCAAAATGCCAT
* *
4890 AGGTGTTAAATCATGAGCGTCGAGGGCAAAAA
1 AGGTGTTAAATCATGAGCGTCGGGGGCCAAAA
4922 ATGGCAAAAA
Statistics
Matches: 125, Mismatches: 19, Indels: 24
0.74 0.11 0.14
Matches are distributed among these distances:
37 1 0.01
38 81 0.65
39 5 0.04
40 3 0.02
43 4 0.03
46 4 0.03
47 4 0.03
48 23 0.18
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.22
Consensus pattern (38 bp):
AGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCAT
Found at i:4871 original size:86 final size:86
Alignment explanation
Indices: 4631--6240 Score: 448
Period size: 86 Copynumber: 18.6 Consensus size: 86
4621 CGTTGGGAGA
* * **
4631 CAAAATGCC-ATAGGTGTTACATCATGAGCGTCGGGGGCCAAAATGCCATAGATGTTACATAAGG
1 CAAAATGCCGA-AGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAATA
* * *
4695 AGGGTCGAGGGCAAAAAATGGT
65 AGCGTCGGGGGCAAAAAATGGC
* * * * *
4717 CAAAATGACGAAGGTGTTATAGCATGAGCGTCGGGGGCCAAAATACCATAGGTGTTACATCATAA
1 CAAAATGCCGAAGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAATAA
*
4782 GCGTCGGGGGCAAAAAATTGC
66 GCGTCGGGGGCAAAAAATGGC
* * * *
4803 CATAATGCCGAAGGTGTTAAATCATGAGCGTCGGGAGTCAAAATGCCATAGGTGTTACACT-ATT
1 CAAAATGCCGAAGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACA-TAATA
4867 AGCGTC--GGG--------GGC
65 AGCGTCGGGGGCAAAAAATGGC
* * *
4879 CAAAATGCCGTAGGTGTTAAATCATGAGCGTCGAGGGCAAAAAATGGCAAAAATGCCAAAGGTGT
1 CAAAATGCCGAAGGTGTTAAATCATGAGCGTC--GGG--------GGCCAAAATGCCATAGGTGT
** *
4944 TACACCATAAGCGTCGGGGGC-AAAAAT-GT
56 TACATAATAAGCGTCGGGGGCAAAAAATGGC
* * * * * *
4973 C---AT-----AGGTGTTACATGC-TTAGCGTCGGGGGCAAAAATGGCTAAAATGCTAAAGGTTA
1 CAAAATGCCGAAGGTGTTAAAT-CATGAGCGTCGGGGGCCAAAAT-GC-CATA-GGT----GTT-
** ** * *
5029 ACCACCATGGGCATCGGGGGCCAAAAATGGC
57 A-CATAATAAGCGTCGGGGGCAAAAAATGGC
* * * * *
5060 TAAAATGCCAAAGGTGTTACACCATGAGCGTC-GGGGCCGAAAATGCCATTA-GTGTTACATCAT
1 CAAAATGCCGAAGGTGTTAAATCATGAGCGTCGGGGGCC-AAAATGCCA-TAGGTGTTACATAAT
* *
5123 TAGTGTCGGGGGCAAAAAATGGC
64 AAGCGTCGGGGGCAAAAAATGGC
* * * ** * * *
5146 TAAAATG-CAATAGGT-TAACAAAAATGATCGTCGAGGGCCAAAAATGGCCAAAACGCCAAATGT
1 CAAAATGCCGA-AGGTGTTA-AATCATGAGCGTCGGGGGCC-AAAAT-GCC-ATA-G------GT
* * *
5209 GTTACATCATGAGCGTCGGGGG-AAAAAATGGA
54 GTTACATAATAAGCGTCGGGGGCAAAAAATGGC
* * * * * *
5241 TAAAATGCCAAATGTGTTACA-CAATGAGCGTCGGGGGCCAAAATACCATAGGTGTTACATCATA
1 CAAAATGCCGAAGGTGTTAAATC-ATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAATA
* *
5305 AGCGTCGGGGGAAAAAAATTGC
65 AGCGTCGGGGGCAAAAAATGGC
* * * *
5327 CAAAATGCCGAAGGTGTTAACCACCATGAGTGTTGGTGGCCATACCTGGCCAAAATGCCAAAGGT
1 CAAAATGCCGAAGGTGTTAA--ATCATGAGCG-TCG-GG--------GGCCAAAATGCCATAGGT
** * *
5392 GTTACACCATGAGCGTC-GGGGC-CAAAAT-GC
54 GTTACATAATAAGCGTCGGGGGCAAAAAATGGC
* * * * * *
5422 C---AT----AA-GTATTACATCATGAGCGTCGGGGGCAAAAATGTCATAGGTGTTACATCATGA
1 CAAAATGCCGAAGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAATAA
* *
5479 GCGTCGGGTGC-CAAAA-GGC
66 GCGTCGGGGGCAAAAAATGGC
* ** * ** *
5498 C---AT----AA-GTGTTACATCATTCGCGTTAGGGGCAAAAAATGGTTAAAATGCCAAAGGT-T
1 CAAAATGCCGAAGGTGTTAAATCATGAGCG-T-CGGG--------GGCCAAAATGCCATAGGTGT
* ** * *
5554 AAGCAGCATGAGCGTCGGGGGCCAAAAATGGC
56 TA-CATAATAAGCGTCGGGGGCAAAAAATGGC
** * * * ** *
5586 CAAAATGCTAAAGGTGTTACAGCATGAGCGTCGGGGGCCATAATGCCATAGGTGTTACATCTTGA
1 CAAAATGCCGAAGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAATAA
* *
5651 CCGTTGGGGGCAAAAAATGGC
66 GCGTCGGGGGCAAAAAATGGC
* * * ** * * * *
5672 CAAAATGCCAAAGGTGTTACA-CAATAAGCAAC-GGGGCAAAAATGACATAGGTGTTACATCATG
1 CAAAATGCCGAAGGTGTTAAATC-ATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAATA
*
5735 AGCGTCGGTGGCAAAAAATGGC
65 AGCGTCGGGGGCAAAAAATGGC
* * * * *
5757 TAAAATGCC-AAAG-GTTAACCACCATGAGCGTCGGGGGTTAAAAATGGCCAAAATTCCAAAGGT
1 CAAAATGCCGAAGGTGTTAA--ATCATGAGCGTC--GGG--------GGCCAAAATGCCATAGGT
** * *
5820 GTTACACCATAAGCGTCGGGAG-ACAAAAT-GC
54 GTTACATAATAAGCGTCGGGGGCAAAAAATGGC
* * * * * * * *
5851 C---AT-----AGGTGTTACATCATTAGTGACGGGGGCCAAAATGCCATAAGTATTACATCATGA
1 CAAAATGCCGAAGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAATAA
5908 GCGTCGGGGG-AATAAAATGGC
66 GCGTCGGGGGCAA-AAAATGGC
* * * ** * * * *
5929 CAAAATGCCAAAGGTGATACATCACAAGCCTCGGGGGGCAAAAAATTGCTAAAATGCTGAAAGTG
1 CAAAATGCCGAAGGTGTTAAATCATGAGCGTC-GGGGGC-CAAAA-TGC---CA---T--AGGTG
* * * * * *
5994 TTAAATCATGAGCGTCAGGAGC-TAAAAT---
55 TTACATAATAAGCGTCGGGGGCAAAAAATGGC
** * * * **
6022 ----AT--C-ATAGGTAATAGATCATGAGCGTCGGAGGCCAAAATGCCATAGATGTTACATAAGG
1 CAAAATGCCGA-AGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAATA
*
6080 AGCGTCGAGGG-AAAAAATGGC
65 AGCGTCGGGGGCAAAAAATGGC
* * **
6101 CAAAATGCCAAAGGTGTT--TTCCATGAGCGTCGGGGGCCAAAATAACATAGGTGTTACATCAA-
1 CAAAATGCCGAAGGTGTTAAAT-CATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACAT-AAT
* *
6163 ATGCGTCGGGGGCAAAAAATTGC
64 AAGCGTCGGGGGCAAAAAATGGC
* *
6186 CAAAATTCCGAAGGTGTTAAATCATGAGCGTCGGGAGCCAAAATGCCATAGGTGT
1 CAAAATGCCGAAGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGT
6241 CCATGAGCGT
Statistics
Matches: 1161, Mismatches: 209, Indels: 308
0.69 0.12 0.18
Matches are distributed among these distances:
75 31 0.03
76 128 0.11
77 8 0.01
78 13 0.01
79 2 0.00
81 3 0.00
83 12 0.01
84 61 0.05
85 153 0.13
86 406 0.35
87 52 0.04
88 33 0.03
89 9 0.01
90 4 0.00
91 7 0.01
92 6 0.01
93 3 0.00
94 21 0.02
95 69 0.06
96 83 0.07
97 26 0.02
98 31 0.03
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (86 bp):
CAAAATGCCGAAGGTGTTAAATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAATAA
GCGTCGGGGGCAAAAAATGGC
Found at i:4980 original size:38 final size:38
Alignment explanation
Indices: 4924--5009 Score: 120
Period size: 38 Copynumber: 2.3 Consensus size: 38
4914 GGCAAAAAAT
4924 GGCAAAAATGCCAAAGGTGTTACA-CCATAAGCGTCGGG
1 GGCAAAAATGCCAAAGGTGTTACATCC-TAAGCGTCGGG
* * * *
4962 GGCAAAAATGTCATAGGTGTTACATGCTTAGCGTCGGG
1 GGCAAAAATGCCAAAGGTGTTACATCCTAAGCGTCGGG
5000 GGCAAAAATG
1 GGCAAAAATG
5010 GCTAAAATGC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
38 42 0.98
39 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (38 bp):
GGCAAAAATGCCAAAGGTGTTACATCCTAAGCGTCGGG
Found at i:5009 original size:124 final size:121
Alignment explanation
Indices: 4743--5666 Score: 409
Period size: 124 Copynumber: 7.1 Consensus size: 121
4733 TTATAGCATG
* * * * * * *
4743 AGCGTCGGGGGCCAAAATACCATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAATTGCCATAA
1 AGCGTCGGGGGCAAAAATGCC-TAGGTGTTAAATCATGAGCGTCGGGGGCAAAAAATGGCAAAAA
* * * * *
4808 TGCCGAAGGTGTTAAATCATGAGCGTCGGGAGTCAAAATGCCATAGGTGTTACACTATT
65 TGCCAAAGGTGTTACACCATGAGCGTCGGG-GCCAAAATGCCATAGGTGTTACA-TCTT
* *
4867 AGCGTCGGGGGCCAAAATGCCGTAGGTGTTAAATCATGAGCGTCGAGGGCAAAAAATGGCAAAAA
1 AGCGTCGGGGGCAAAAATGCC-TAGGTGTTAAATCATGAGCGTCGGGGGCAAAAAATGGCAAAAA
* * *
4932 TGCCAAAGGTGTTACACCATAAGCGTCGGGGGCAAAAATGTCATAGGTGTTACATGCTT
65 TGCCAAAGGTGTTACACCATGAGCGTC-GGGGCCAAAATGCCATAGGTGTTACAT-CTT
* * * * * *
4991 AGCGTCGGGGGCAAAAATGGCTAAAATGCTAAAGGTTAACCACCATGGGCATCGGGGGCCAAAAA
1 AGCGTCGGGGGCAAAAATGCCT---A-GGT----GTTAA--ATCATGAGCGTCGGGGGCAAAAAA
*
5056 TGGCTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCGAAAATGCCATTA-GTGTTACAT
56 TGGCAAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCC-AAAATGCCA-TAGGTGTTACAT
5120 CATT
119 C-TT
* * * ** * * *
5124 AGTGTCGGGGGCAAAAAATGGCTAAAATGCAATAGGTTAACAAAAATGATCGTCGAGGGCCAAAA
1 AGCGTCGGGGGC-AAAAATGCCT---A-G--GT--GTT-A-AATCATGAGCGTCGGGGGCAAAAA
* * * * ** * *
5189 ATGGCCAAAACGCCAAATGTGTTACATCATGAGCGTCGGGGGAAAAAATGGATAAAATGCCAAAT
55 ATGGCAAAAATGCCAAAGGTGTTACACCATGAGCGTC---GG-------GGCCAAAATGCCATAG
*
5254 GTGTTACA-CAATG
110 GTGTTACATC--TT
* * * * * * *
5267 AGCGTCGGGGGCCAAAATACCATAGGTGTTACATCATAAGCGTCGGGGGAAAAAAATTGCCAAAA
1 AGCGTCGGGGGCAAAAATGCC-TAGGTGTTAAATCATGAGCGTCGGGGGCAAAAAATGGCAAAAA
* * * *
5332 TGCCGAAGGTGTTAACCACCATGAGTGTTGGTGGCCATACCTGGCCAAAATGCCAAAGGTGTTAC
65 TGCCAAAGGTGTT-A-CACCATGAGCG-T--CGG--------GGCCAAAATGCCATAGGTGTTAC
* *
5397 ACCATG
117 ATC-TT
* * * *
5403 AGCGTC-GGGGCCAAAATGCCATAAGTATTACATCATGAGCGTCGGGGGC-AAAAAT-G------
1 AGCGTCGGGGGCAAAAATGCC-TAGGTGTTAAATCATGAGCGTCGGGGGCAAAAAATGGCAAAAA
* * * *
5459 T--CATAGGTGTTACATCATGAGCGTCGGGTGCCAAAAGGCCATAAGTGTTACATCATT
65 TGCCAAAGGTGTTACACCATGAGCGTCGGG-GCCAAAATGCCATAGGTGTTACATC-TT
* ** * * * *
5516 CGCGTTAGGGGCAAAAAATGGTTAAAATGCCAAAG-GTTAAGCAGCATGAGCGTCGGGGGCCAAA
1 AGCGTCGGGGGC-----A-----AAAATGCCTAGGTGTTAA--ATCATGAGCGTCGGGGGCAAAA
* * * *
5580 AATGGCCAAAATGCTAAAGGTGTTACAGCATGAGCGTCGGGGGCCATAATGCCATAGGTGTTACA
54 AATGGCAAAAATGCCAAAGGTGTTACACCATGAGCGTC-GGGGCCAAAATGCCATAGGTGTTACA
5645 TCTT
118 TCTT
* *
5649 GACCGTTGGGGGCAAAAA
1 -AGCGTCGGGGGCAAAAA
5667 ATGGCCAAAA
Statistics
Matches: 632, Mismatches: 102, Indels: 132
0.73 0.12 0.15
Matches are distributed among these distances:
112 1 0.00
113 27 0.04
114 5 0.01
120 2 0.00
122 4 0.01
123 14 0.02
124 151 0.24
125 17 0.03
126 2 0.00
127 3 0.00
129 1 0.00
131 5 0.01
132 7 0.01
133 121 0.19
134 133 0.21
135 56 0.09
136 36 0.06
137 4 0.01
139 1 0.00
140 1 0.00
142 8 0.01
143 31 0.05
144 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.20
Consensus pattern (121 bp):
AGCGTCGGGGGCAAAAATGCCTAGGTGTTAAATCATGAGCGTCGGGGGCAAAAAATGGCAAAAAT
GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAATGCCATAGGTGTTACATCTT
Found at i:5220 original size:134 final size:133
Alignment explanation
Indices: 4902--5238 Score: 437
Period size: 133 Copynumber: 2.5 Consensus size: 133
4892 GTGTTAAATC
* * *
4902 ATGAGCGTCGAGGGCAAAAAATGGCAAAAATGCCAAAGGTGTTACACCATAAGCGTCGGGGGCAA
1 ATGAGCGTCGAGGGCCAAAAATGGCAAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCAA
* *
4967 AAATGTCATAGGTGTTACATGCTTAGCGTCGGGGGCAAAAATGGCTAAAATGCTAAAGGTTAACC
66 AAATGCCATAGGTGTTACATGCTTAGCGTCGGGGGCAAAAATGGCTAAAATGCTAAAGGTTAACA
**
5032 ACC
131 AAA
* * * * *
5035 ATGGGCATCGGGGGCCAAAAATGGCTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCGA
1 ATGAGCGTCGAGGGCCAAAAATGGCAAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCAA
*
5100 AAATGCCATTA-GTGTTACAT-CATTAGTGTCGGGGGCAAAAAATGGCTAAAATGC-AATAGGTT
66 AAATGCCA-TAGGTGTTACATGC-TTAGCGTCGGGGGC-AAAAATGGCTAAAATGCTAA-AGGTT
5162 AACAAAA
127 AACAAAA
* * * * * **
5169 ATGATCGTCGAGGGCCAAAAATGGCCAAAACGCCAAATGTGTTACATCATGAGCGTCGGGGGAAA
1 ATGAGCGTCGAGGGCCAAAAATGGCAAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCAA
5234 AAATG
66 AAATG
5239 GATAAAATGC
Statistics
Matches: 176, Mismatches: 24, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
132 1 0.01
133 88 0.50
134 87 0.49
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (133 bp):
ATGAGCGTCGAGGGCCAAAAATGGCAAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCAA
AAATGCCATAGGTGTTACATGCTTAGCGTCGGGGGCAAAAATGGCTAAAATGCTAAAGGTTAACA
AAA
Found at i:5237 original size:47 final size:47
Alignment explanation
Indices: 5111--5277 Score: 162
Period size: 47 Copynumber: 3.5 Consensus size: 47
5101 AATGCCATTA
* *
5111 GTGTTACATCATTAGTGTCGGGGGCAAAAAATGGCTAAAATG-C-AAT
1 GTGTTACATCATGAGCGTCGGGGG-AAAAAATGGCTAAAATGCCAAAT
** * ** * *
5157 AG-GTTAACAAAAATGATCGTCGAGGGCCAAAAATGGCCAAAACGCCAAAT
1 -GTGTT-AC-ATCATGAGCGTCG-GGGGAAAAAATGGCTAAAATGCCAAAT
*
5207 GTGTTACATCATGAGCGTCGGGGGAAAAAATGGATAAAATGCCAAAT
1 GTGTTACATCATGAGCGTCGGGGGAAAAAATGGCTAAAATGCCAAAT
5254 GTGTTACA-CAATGAGCGTCGGGGG
1 GTGTTACATC-ATGAGCGTCGGGGG
5278 CCAAAATACC
Statistics
Matches: 96, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
46 4 0.04
47 47 0.49
48 32 0.33
49 7 0.07
50 6 0.06
ACGTcount: A:0.37, C:0.16, G:0.28, T:0.20
Consensus pattern (47 bp):
GTGTTACATCATGAGCGTCGGGGGAAAAAATGGCTAAAATGCCAAAT
Found at i:5279 original size:95 final size:96
Alignment explanation
Indices: 5111--5283 Score: 237
Period size: 95 Copynumber: 1.8 Consensus size: 96
5101 AATGCCATTA
* * * *
5111 GTGTTACATCATTAGTGTCGGGGGCAAAAAATGGCTAAAATGCAATAGGTTAACAAAAATGATCG
1 GTGTTACATCATGAGCGTCGGGGGCAAAAAATGGATAAAATGCAATAGGTTAACAAAAATGAGCG
5176 TCGAGGGCCAAAAATGGCCAAAACGCCAAAT
66 TCGAGGGCCAAAAATGGCCAAAACGCCAAAT
*
5207 GTGTTACATCATGAGCGTCGGGGG-AAAAAATGGATAAAATGCCAA-ATGTGTT-AC-ACAATGA
1 GTGTTACATCATGAGCGTCGGGGGCAAAAAATGGATAAAATG-CAATA-G-GTTAACAAAAATGA
*
5268 GCGTCGGGGGCCAAAA
63 GCGTCGAGGGCCAAAA
5284 TACCATAGGT
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
95 37 0.54
96 28 0.41
97 3 0.04
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.20
Consensus pattern (96 bp):
GTGTTACATCATGAGCGTCGGGGGCAAAAAATGGATAAAATGCAATAGGTTAACAAAAATGAGCG
TCGAGGGCCAAAAATGGCCAAAACGCCAAAT
Found at i:5284 original size:38 final size:38
Alignment explanation
Indices: 5242--5315 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
5232 AAAAATGGAT
* * *
5242 AAAATGCCAAATGTGTTACA-CAATGAGCGTCGGGGGCC
1 AAAATACCAAAGGTGTTACATC-ATAAGCGTCGGGGGCC
*
5280 AAAATACCATAGGTGTTACATCATAAGCGTCGGGGG
1 AAAATACCAAAGGTGTTACATCATAAGCGTCGGGGG
5316 AAAAAAATTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 30 0.97
39 1 0.03
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.20
Consensus pattern (38 bp):
AAAATACCAAAGGTGTTACATCATAAGCGTCGGGGGCC
Found at i:5415 original size:37 final size:37
Alignment explanation
Indices: 5374--5514 Score: 194
Period size: 38 Copynumber: 3.8 Consensus size: 37
5364 GGCCATACCT
*
5374 GGCCAAAATGCCA-AAGGTGTTACACCATGAGCGTCGG
1 GGCCAAAATGCCATAA-GTGTTACATCATGAGCGTCGG
*
5411 GGCCAAAATGCCATAAGTATTACATCATGAGCGTCGGG
1 GGCCAAAATGCCATAAGTGTTACATCATGAGCGTC-GG
* * *
5449 GGCAAAAATGTCATAGGTGTTACATCATGAGCGTCGG
1 GGCCAAAATGCCATAAGTGTTACATCATGAGCGTCGG
*
5486 GTGCCAAAAGGCCATAAGTGTTACATCAT
1 G-GCCAAAATGCCATAAGTGTTACATCAT
5515 TCGCGTTAGG
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
37 33 0.36
38 58 0.64
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (37 bp):
GGCCAAAATGCCATAAGTGTTACATCATGAGCGTCGG
Found at i:5472 original size:38 final size:38
Alignment explanation
Indices: 5378--5532 Score: 179
Period size: 38 Copynumber: 4.1 Consensus size: 38
5368 ATACCTGGCC
* *
5378 AAAATGCCA-AAGGTGTTACACCATGAGCGTC-GGGGCC
1 AAAATGCCATAA-GTGTTACATCATGAGCGTCGGGGGCA
*
5415 AAAATGCCATAAGTATTACATCATGAGCGTCGGGGGCA
1 AAAATGCCATAAGTGTTACATCATGAGCGTCGGGGGCA
* * * *
5453 AAAATGTCATAGGTGTTACATCATGAGCGTCGGGTGCC
1 AAAATGCCATAAGTGTTACATCATGAGCGTCGGGGGCA
* ** **
5491 AAAAGGCCATAAGTGTTACATCATTCGCGTTAGGGGCA
1 AAAATGCCATAAGTGTTACATCATGAGCGTCGGGGGCA
5529 AAAA
1 AAAA
5533 ATGGTTAAAA
Statistics
Matches: 99, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
37 26 0.26
38 73 0.74
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.21
Consensus pattern (38 bp):
AAAATGCCATAAGTGTTACATCATGAGCGTCGGGGGCA
Found at i:5527 original size:76 final size:75
Alignment explanation
Indices: 5378--5532 Score: 220
Period size: 76 Copynumber: 2.1 Consensus size: 75
5368 ATACCTGGCC
*
5378 AAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAATGCCATAAGTATTACATCATGAGC
1 AAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAGGCCATAAGTATTACATCATGAGC
*
5443 GTCGGGGGCA
66 GTCAGGGGCA
* * * * **
5453 AAAATGTCATAGGTGTTACATCATGAGCGTCGGGTGCCAAAAGGCCATAAGTGTTACATCATTCG
1 AAAATGCCAAAGGTGTTACACCATGAGCGTCGGG-GCCAAAAGGCCATAAGTATTACATCATGAG
*
5518 CGTTAGGGGCA
65 CGTCAGGGGCA
5529 AAAA
1 AAAA
5533 ATGGTTAAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
75 31 0.44
76 39 0.56
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.21
Consensus pattern (75 bp):
AAAATGCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAGGCCATAAGTATTACATCATGAGC
GTCAGGGGCA
Found at i:5660 original size:38 final size:38
Alignment explanation
Indices: 5583--5675 Score: 96
Period size: 38 Copynumber: 2.4 Consensus size: 38
5573 GGCCAAAAAT
* *
5583 GGCCAAAATGCTAAAGGTGTTACAGCATGAGCGTCGGG
1 GGCCAAAATGCCAAAGGTGTTACAGCATGACCGTCGGG
* * * * *
5621 GGCCATAATGCCATAGGTGTTACATCTTGACCGTTGGG
1 GGCCAAAATGCCAAAGGTGTTACAGCATGACCGTCGGG
*
5659 GGCAAAAAATGGCCAAA
1 GGC-CAAAAT-GCCAAA
5676 ATGCCAAAGG
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
38 34 0.79
39 4 0.09
40 5 0.12
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.20
Consensus pattern (38 bp):
GGCCAAAATGCCAAAGGTGTTACAGCATGACCGTCGGG
Found at i:5707 original size:134 final size:132
Alignment explanation
Indices: 5463--5715 Score: 316
Period size: 134 Copynumber: 1.9 Consensus size: 132
5453 AAAATGTCAT
* *
5463 AGGTGTTACATCATGAGCGTCGGGTGCCAAAAGGCCATAAGTGTTACATCATTCGCGTTAGGGGC
1 AGGTGTTACAGCATGAGCGTCGGGGGCCAAAAGGCCATAAGTGTTACATCATTCGCGTTAGGGGC
** * **
5528 AAAAAATGGTTAAAATGCCAAAGGTTAAGCAGCATGAGCGTCGGGGGCCAAAAATGGCCAAAATG
66 AAAAAATGGCCAAAATGCCAAAGGTTAAGCAGCATAAGCAAC-GGGG-CAAAAATGGCCAAAATG
5593 CTAA
129 CTAA
* * * *
5597 AGGTGTTACAGCATGAGCGTCGGGGGCCATAATGCCATAGGTGTTACATC-TT-GACCGTTGGGG
1 AGGTGTTACAGCATGAGCGTCGGGGGCCAAAAGGCCATAAGTGTTACATCATTCG--CGTTAGGG
*
5660 GCAAAAAATGGCCAAAATGCCAAAGGTGTTA-CA-CAATAAGCAACGGGGCAAAAATG
64 GCAAAAAATGGCCAAAATGCCAAAGGT-TAAGCAGC-ATAAGCAACGGGGCAAAAATG
5716 ACATAGGTGT
Statistics
Matches: 103, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
132 9 0.09
133 7 0.07
134 85 0.83
135 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (132 bp):
AGGTGTTACAGCATGAGCGTCGGGGGCCAAAAGGCCATAAGTGTTACATCATTCGCGTTAGGGGC
AAAAAATGGCCAAAATGCCAAAGGTTAAGCAGCATAAGCAACGGGGCAAAAATGGCCAAAATGCT
AA
Found at i:5748 original size:85 final size:86
Alignment explanation
Indices: 5560--5771 Score: 284
Period size: 85 Copynumber: 2.5 Consensus size: 86
5550 GGTTAAGCAG
* * * ** *
5560 CATGAGCGTCGGGGGCCAAAAATGGCCAAAATGCTAAAGGTGTTACAGCATGAGCGTCGGGGGCC
1 CATGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTACAGCATAAGCAACGGGGGCA
* *
5625 ATAATGCCATAGGTGTTACAT
66 AAAATGACATAGGTGTTACAT
* * *
5646 CTTGACCGTTGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTACA-CAATAAGCAAC-GGGGC
1 CATGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTACAGC-ATAAGCAACGGGGGC
5709 AAAAATGACATAGGTGTTACAT
65 AAAAATGACATAGGTGTTACAT
* *
5731 CATGAGCGTCGGTGGCAAAAAATGGCTAAAATGCCAAAGGT
1 CATGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGT
5772 TAACCACCAT
Statistics
Matches: 109, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
85 61 0.56
86 48 0.44
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (86 bp):
CATGAGCGTCGGGGGCAAAAAATGGCCAAAATGCCAAAGGTGTTACAGCATAAGCAACGGGGGCA
AAAATGACATAGGTGTTACAT
Found at i:5763 original size:219 final size:216
Alignment explanation
Indices: 5191--6388 Score: 832
Period size: 219 Copynumber: 5.6 Consensus size: 216
5181 GGCCAAAAAT
* * * *
5191 GGCCAAAACGCCAAATGTGTTACATCATGAGCGTCGGGGG-AAAAAATGGATAAAATGCCAAATG
1 GGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCAAAAAATGG--AAAATGCCAAAGG
*
5255 TGTTACACAATGAGCGTCGGGGGCCAAAAT-ACCATAGGTGTTACATCATAAGCGTCGGGGGAAA
64 TGTTACACAATGAGCGTC-GGGGCCAAAATGA-CATAGGTGTTACATCATAAGCGTC-GGGGCAA
* * * * * * * **
5319 AAAATTGCCAAAATGCCGAAGGTGTTAACCACCATGAGTGTTGGTGGCCATACCTGGCCAAAATG
126 AAAATGGCTAAAATGCC-AAAG-GTTAACCACCATGAGCGTCGGGGGCCAAAAATGGCCAAAATG
5384 CCAAAGGTGTTACACCATGAGCGTC-GG
189 CCAAAGGTGTTACACCATGAGCGTCGGG
* * *
5411 GGCCAAAATGCCATAAGTATTACATCATGAGCGTCGGGGGC-AAAAAT-G----T--CATAGGTG
1 GGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCAAAAAATGGAAAATGCCAAAGGTG
* * * ** *
5468 TTACATC-ATGAGCGTCGGGTGCCAAAAGGCCATAAGTGTTACATCATTCGCGTTAGGGGCAAAA
66 TTACA-CAATGAGCGTCGGG-GCCAAAATGACATAGGTGTTACATCATAAGCG-TCGGGGCAAAA
* * * *
5532 AATGGTTAAAATGCCAAAGGTTAAGCAGCATGAGCGTCGGGGGCCAAAAATGGCCAAAATGCTAA
128 AATGGCTAAAATGCCAAAGGTTAACCACCATGAGCGTCGGGGGCCAAAAATGGCCAAAATGCCAA
*
5597 AGGTGTTACAGCATGAGCGTCGGG
193 AGGTGTTACACCATGAGCGTCGGG
* * * *
5621 GGCCATAATGCCATAGGTGTTACATCTTGACCGTTGGGGGCAAAAAATGGCCAAAATGCCAAAGG
1 GGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCAAAAAATGG--AAAATGCCAAAGG
* ** * *
5686 TGTTACACAATAAGCAACGGGGCAAAAATGACATAGGTGTTACATCATGAGCGTCGGTGGCAAAA
64 TGTTACACAATGAGCGTCGGGGCCAAAATGACATAGGTGTTACATCATAAGCGTCGG-GGCAAAA
** *
5751 AATGGCTAAAATGCCAAAGGTTAACCACCATGAGCGTCGGGGGTTAAAAATGGCCAAAATTCCAA
128 AATGGCTAAAATGCCAAAGGTTAACCACCATGAGCGTCGGGGGCCAAAAATGGCCAAAATGCCAA
*
5816 AGGTGTTACACCATAAGCGTCGGG
193 AGGTGTTACACCATGAGCGTCGGG
* * * * * *
5840 AGACAAAATGCCATAGGTGTTACATCATTAGTGACGGGGGC--------CAAAATGCCATAA-GT
1 GGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCAAAAAATGGAAAATGCCA-AAGGT
* * * * * *
5896 ATTACATC-ATGAGCGTCGGGGGAATAAAATGGCCAAAATGCCAAAGGTGATACATCACAAGCCT
65 GTTACA-CAATGAGCGTC---GG--------GGCCAAAATGACATAGGTGTTACATCATAAGCGT
* * * * * *
5960 CGGGGGGCAAAAAATTGCTAAAATGCTGAAAGTGTTAA--ATCATGAGCGTCAGGAG-CTAAAAT
118 C--GGGGCAAAAAATGGCTAAAATGC-CAAAG-GTTAACCACCATGAGCGTCGGGGGCCAAAAAT
* ** * * *
6022 -------AT--CATAGGTAATAGATCATGAGCGTCGGA
179 GGCCAAAATGCCAAAGGTGTTACACCATGAGCGTCGGG
* * * *
6051 GGCCAAAATGCCATAGATGTTACATAAGGAGCGTCGAGGG-AAAAAATGGCCAAAATGCCAAAGG
1 GGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCAAAAAATGG--AAAATGCCAAAGG
* *
6115 TGTTTTC-C-ATGAGCGTCGGGGGCCAAAATAACATAGGTGTTACATCA-AATGCGTCGGGGGCA
64 TG-TTACACAATGAGCGTC-GGGGCCAAAATGACATAGGTGTTACATCATAA-GCGTC-GGGGCA
* * * * *
6177 AAAAATTGCCAAAATTCCGAAGGTGTTAA--ATCATGAGCGTC--GGG------A--GCCAAAAT
125 AAAAATGGCTAAAATGCC-AAAG-GTTAACCACCATGAGCGTCGGGGGCCAAAAATGGCCAAAAT
* * *
6230 GCCATAGGTG-T---CCATGAGCGTCTGA
188 GCCAAAGGTGTTACACCATGAGCGTCGGG
* * * * * *
6255 GGCCAAATTGCCGTCGGAGTTACATCATGAGCGTCGGGGGCAAAAAAATGGTCCAAATGACAAAG
1 GGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGC-AAAAAATGG--AAAATGCCAAAG
* *
6320 GTGTTACACCATGAGCGTCGGGCGCCAAAAT-ACCATAGGTGTTACATCATAAGGGTCGGAGGCA
63 GTGTTACACAATGAGCGTCGGG-GCCAAAATGA-CATAGGTGTTACATCATAAGCGTCGG-GGCA
6384 AAAAA
125 AAAAA
6389 ATTGCCATAA
Statistics
Matches: 787, Mismatches: 126, Indels: 143
0.75 0.12 0.14
Matches are distributed among these distances:
201 1 0.00
204 44 0.06
205 3 0.00
206 34 0.04
207 47 0.06
208 54 0.07
209 106 0.13
210 46 0.06
211 123 0.16
212 5 0.01
213 3 0.00
217 3 0.00
218 4 0.01
219 159 0.20
220 107 0.14
221 37 0.05
222 6 0.01
223 5 0.01
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (216 bp):
GGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCAAAAAATGGAAAATGCCAAAGGTG
TTACACAATGAGCGTCGGGGCCAAAATGACATAGGTGTTACATCATAAGCGTCGGGGCAAAAAAT
GGCTAAAATGCCAAAGGTTAACCACCATGAGCGTCGGGGGCCAAAAATGGCCAAAATGCCAAAGG
TGTTACACCATGAGCGTCGGG
Found at i:5916 original size:38 final size:38
Alignment explanation
Indices: 5802--5917 Score: 126
Period size: 38 Copynumber: 3.1 Consensus size: 38
5792 GGTTAAAAAT
* *
5802 GGCCAAAATTCCA-AAGGTGTTACACCATAAGCGTCGGG
1 GGCCAAAATGCCATAA-GTGTTACATCATAAGCGTCGGG
* * * * * *
5840 AGACAAAATGCCATAGGTGTTACATCATTAGTGACGGG
1 GGCCAAAATGCCATAAGTGTTACATCATAAGCGTCGGG
* *
5878 GGCCAAAATGCCATAAGTATTACATCATGAGCGTCGGG
1 GGCCAAAATGCCATAAGTGTTACATCATAAGCGTCGGG
5916 GG
1 GG
5918 AATAAAATGG
Statistics
Matches: 62, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
38 61 0.98
39 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.28, T:0.21
Consensus pattern (38 bp):
GGCCAAAATGCCATAAGTGTTACATCATAAGCGTCGGG
Found at i:5938 original size:172 final size:171
Alignment explanation
Indices: 5672--6116 Score: 452
Period size: 173 Copynumber: 2.6 Consensus size: 171
5662 AAAAAATGGC
* * * * *
5672 CAAAATGCCAAAGGTGTTACA-CAATAAGCAAC-GGGGCAAAAATGACATAGGTGTTACATCATG
1 CAAAATGCCATAGGTGTTACATC-ATAAGCGACGGGGGCCAAAATGCCATAAGTGTTACATCATG
* * * ** * **
5735 AGCGTCGGTGGCAAAAAATGGCTAAAATGCCAAAGGTTA-ACCACCATGAGCGTC-GGGGGTTAA
65 AGCGTCGG-GGGAAAAAATGGCCAAAATGCCAAAGGTGATA-CACCACAAGCCTCGGGGGGCAAA
* * *
5798 AAATGGCCAAAATTC-CAAAGGTGTTACACCATAAGCGTCGGGAG
128 AAATGGCCAAAATGCTCAAA-GTGTTAAACCATAAGCGTCAGGAG
* * *
5842 ACAAAATGCCATAGGTGTTACATCATTAGTGACGGGGGCCAAAATGCCATAAGTATTACATCATG
1 -CAAAATGCCATAGGTGTTACATCATAAGCGACGGGGGCCAAAATGCCATAAGTGTTACATCATG
*
5907 AGCGTCGGGGGAATAAAATGGCCAAAATGCCAAAGGTGATACATCACAAGCCTCGGGGGGCAAAA
65 AGCGTCGGGGGAA-AAAATGGCCAAAATGCCAAAGGTGATACACCACAAGCCTCGGGGGGCAAAA
* * * * *
5972 AATTGCTAAAATGCTGAAAGTGTTAAATCATGAGCGTCAGGAG
129 AATGGCCAAAATGCTCAAAGTGTTAAACCATAAGCGTCAGGAG
** ** * * * * * *
6015 CTAAAATATCATAGGTAATAGATCATGAGCGTCGGAGGCCAAAATGCCAT-AGATGTTACATAAG
1 C-AAAATGCCATAGGTGTTACATCATAAGCGACGGGGGCCAAAATGCCATAAG-TGTTACATCAT
*
6079 GAGCGTCGAGGGAAAAAATGGCCAAAATGCCAAAGGTG
64 GAGCGTCGGGGGAAAAAATGGCCAAAATGCCAAAGGTG
6117 TTTTCCATGA
Statistics
Matches: 228, Mismatches: 38, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
171 30 0.13
172 95 0.42
173 100 0.44
174 3 0.01
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.19
Consensus pattern (171 bp):
CAAAATGCCATAGGTGTTACATCATAAGCGACGGGGGCCAAAATGCCATAAGTGTTACATCATGA
GCGTCGGGGGAAAAAATGGCCAAAATGCCAAAGGTGATACACCACAAGCCTCGGGGGGCAAAAAA
TGGCCAAAATGCTCAAAGTGTTAAACCATAAGCGTCAGGAG
Found at i:6180 original size:84 final size:84
Alignment explanation
Indices: 6036--6240 Score: 245
Period size: 84 Copynumber: 2.4 Consensus size: 84
6026 TAGGTAATAG
* *
6036 ATCATGAGCGTCGGAGGCCAAAATGCCATAGATGTTACATAAGGAGCGTCGAGGG-AAAAAATGG
1 ATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAA-GAGCGTCGAGGGAAAAAAATGG
6100 CCAAAATGCCAAAGGTGTT-
65 CCAAAATGCCAAAGGTGTTA
* ** * *
6119 TTCCATGAGCGTCGGGGGCCAAAATAACATAGGTGTTACATCAA-ATGCGTCGGGGGCAAAAAAT
1 AT-CATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACAT-AAGA-GCGTCGAGGGAAAAAAAT
* * *
6183 TGCCAAAATTCCGAAGGTGTTAA
63 GGCCAAAATGCCAAAGGTGTT-A
*
6206 ATCATGAGCGTCGGGAGCCAAAATGCCATAGGTGT
1 ATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGT
6241 CCATGAGCGT
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
83 2 0.02
84 43 0.42
85 27 0.26
86 30 0.29
87 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (84 bp):
ATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAAGAGCGTCGAGGGAAAAAAATGGC
CAAAATGCCAAAGGTGTTA
Found at i:6211 original size:208 final size:208
Alignment explanation
Indices: 5926--6474 Score: 637
Period size: 208 Copynumber: 2.6 Consensus size: 208
5916 GGAATAAAAT
* * * * * *
5926 GGCCAAAATGCCAAAGGTGATACATCACAAGCCTCGGGGGGCAAAAAATTGCTAAAATGCTGAAA
1 GGCCAAAATACCATAGGTGTTACATCACAAGCGTC-GGGGGCAAAAAATTGCCAAAATGCCGAAA
* *
5991 GTGTTAAATCATGAGCGTCAGGAGCTAAAATATCATAGGTAATAGATCATGAGCGTCGGAGGCCA
65 GTGTTAAATCATGAGCGTCGGGAGCTAAAATGTCATAGGT--TAGATCATGAGCGTCGGAGGCCA
*
6056 AAATGCCAT-AGATGTTACATAAGGAGCGTCGAGGG-AAAAAATGG-CCAAAATGCCAAAGGTGT
128 AAATGCCATCAGA-GTTACATAAGGAGCGTCGAGGGAAAAAAATGGTCC-AAATGACAAAGGTGT
**
6118 T-TTCCATGAGCGTCGGG
191 TACACCATGAGCGTCGGG
* * *
6135 GGCCAAAATAACATAGGTGTTACATCA-AATGCGTCGGGGGCAAAAAATTGCCAAAATTCCGAAG
1 GGCCAAAATACCATAGGTGTTACATCACAA-GCGTCGGGGGCAAAAAATTGCCAAAATGCCGAAA
* * *
6199 GTGTTAAATCATGAGCGTCGGGAGCCAAAATGCCATAGG-T-G-TCCATGAGCGTCTGAGGCCAA
65 GTGTTAAATCATGAGCGTCGGGAGCTAAAATGTCATAGGTTAGAT-CATGAGCGTCGGAGGCCAA
* * * * * *
6261 ATTGCCGTCGGAGTTACATCATGAGCGTCGGGGGCAAAAAAATGGTCCAAATGACAAAGGTGTTA
129 AATGCCATCAGAGTTACATAAGGAGCGTCGAGGG-AAAAAAATGGTCCAAATGACAAAGGTGTTA
6326 CACCATGAGCGTCGGG
193 CACCATGAGCGTCGGG
* * * * * *
6342 CGCCAAAATACCATAGGTGTTACATCATAAGGGTCGGAGGCAAAAAAATTGCCATAATGCCGAAT
1 GGCCAAAATACCATAGGTGTTACATCACAAGCGTCGGGGGC-AAAAAATTGCCAAAATGCCGAAA
* * * * *
6407 GTGTTAAATCATGAGCGTCGGGAACTAAAATGTCATAGGTGTTATATCATGAGCCTCGGGGGCAA
65 GTGTTAAATCATGAGCGTCGGGAGCTAAAATGTCATA-G-GTTAGATCATGAGCGTCGGAGGCCA
6472 AAA
128 AAA
6475 ATGGCCAAAA
Statistics
Matches: 287, Mismatches: 39, Indels: 25
0.82 0.11 0.07
Matches are distributed among these distances:
203 1 0.00
204 44 0.15
205 3 0.01
206 24 0.08
207 50 0.17
208 118 0.41
209 28 0.10
210 1 0.00
211 1 0.00
212 16 0.06
213 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.20
Consensus pattern (208 bp):
GGCCAAAATACCATAGGTGTTACATCACAAGCGTCGGGGGCAAAAAATTGCCAAAATGCCGAAAG
TGTTAAATCATGAGCGTCGGGAGCTAAAATGTCATAGGTTAGATCATGAGCGTCGGAGGCCAAAA
TGCCATCAGAGTTACATAAGGAGCGTCGAGGGAAAAAAATGGTCCAAATGACAAAGGTGTTACAC
CATGAGCGTCGGG
Found at i:6239 original size:38 final size:38
Alignment explanation
Indices: 6184--6770 Score: 132
Period size: 38 Copynumber: 14.0 Consensus size: 38
6174 GCAAAAAATT
* *
6184 GCCAAAATTCCGA-AGGTGTTAAATCATGAGCGTCGGGA
1 GCCAAAATGCC-ATAGGTGTTACATCATGAGCGTCGGGA
*
6222 GCCAAAATGCCATAGGTG-T-C--CATGAGCGTC-TGA
1 GCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGA
* * * * *
6255 GGCCAAATTGCCGTCGGAGTTACATCATGAGCGTCGGGG
1 -GCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGA
* * *
6294 GCAAAAAAATGGTCCAAATGACAAAGGTGTTACACCATGAGCGTCGGGC
1 GC--CAAAAT-G-CC--AT-----AGGTGTTACATCATGAGCGTCGGGA
* * *
6343 GCCAAAATACCATAGGTGTTACATCATAAGGGTC-GGA
1 GCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGA
* *
6380 GGCAAAAAAATTGCCATAATGCCGAATGTGTTAAATCATGAGCGTCGGGA
1 -GC--CAAAA-TGCCAT-A----G---GTGTTACATCATGAGCGTCGGGA
* * * * *
6430 ACTAAAATGTCATAGGTGTTATATCATGAGCCTCGGGGGCAAAAAA
1 GCCAAAATGCCATAGGTGTTACATCATGAGCGTC--GGG------A
* * * * * *
6476 TGGCCAAAATGCCAAATGTGTTATATCATGTGTGTCGGGT
1 --GCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGA
*
6516 GCCAAAATGCCATAGGTGTTACATCATTAGCGTCTGGGGCAAAAA
1 GCCAAAATGCCATAGGTGTTACATCATGAGCGTC--GGG-----A
* * * * * *
6561 TGGCTAAAATTCCAAAGGT-TAACTAGT-TTGAGCGTCGGGG
1 --GCCAAAATGCCATAGGTGTTAC-A-TCATGAGCGTCGGGA
** * *
6601 GCCAAAACTGGCCAAAATGATAAATGTATTACACCATGAGCGTC-GGT
1 GCCAAAA-T-GCC------ATAGGTGT--TACATCATGAGCGTCGGGA
*
6648 GCCAAAATGCCATAGGTGTTACATAATGAGCGTCGGGA
1 GCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGA
* *
6686 GCAAAAAATAGCCAAAATGCAAAAGGTGTTACATCATGAGCGTCGGGT
1 GC-CAAAAT-GCC---AT-----AGGTGTTACATCATGAGCGTCGGGA
*
6734 GCCAAAATGCCATAGGTGTTACATCATTAGCGTCGGG
1 GCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGG
6771 GGCAAAGAAT
Statistics
Matches: 400, Mismatches: 74, Indels: 150
0.64 0.12 0.24
Matches are distributed among these distances:
33 2 0.00
34 24 0.06
35 1 0.00
36 1 0.00
37 17 0.04
38 125 0.31
39 13 0.03
40 19 0.05
41 7 0.02
42 3 0.01
43 6 0.01
44 1 0.00
45 9 0.02
46 20 0.05
47 46 0.12
48 61 0.15
49 42 0.10
50 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (38 bp):
GCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGA
Found at i:6277 original size:120 final size:121
Alignment explanation
Indices: 6099--6361 Score: 298
Period size: 121 Copynumber: 2.2 Consensus size: 121
6089 GGAAAAAATG
* * *
6099 GCCAAAATGCCAAAGGTGTTTTCCATGAGCGTCGGGGGCCAAAATAACATAGGTGTTACATCA-A
1 GCCAAAATGCCATAGGTG---TCCATGAGCGTCGGAGGCCAAAATAACATAGGAGTTACATCATA
* ** * *
6163 ATGCGTCGGGGGC-AAAAAATTG-CCAAAATTCCGAAGGTGTTAAATCATGAGCGTCGGGA
63 A-GCGTCGGGGGCAAAAAAATGGTCC-AAATGACAAAGGTGTTAAACCATGAGCGTCGGGA
* * ** * * *
6222 GCCAAAATGCCATAGGTGTCCATGAGCGTCTGAGGCCAAATTGCCGTCGGAGTTACATCATGAGC
1 GCCAAAATGCCATAGGTGTCCATGAGCGTCGGAGGCCAAAATAACATAGGAGTTACATCATAAGC
* *
6287 GTCGGGGGCAAAAAAATGGTCCAAATGACAAAGGTGTTACACCATGAGCGTCGGGC
66 GTCGGGGGCAAAAAAATGGTCCAAATGACAAAGGTGTTAAACCATGAGCGTCGGGA
*
6343 GCCAAAATACCATAGGTGT
1 GCCAAAATGCCATAGGTGT
6362 TACATCATAA
Statistics
Matches: 119, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
120 45 0.38
121 55 0.46
122 2 0.02
123 17 0.14
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (121 bp):
GCCAAAATGCCATAGGTGTCCATGAGCGTCGGAGGCCAAAATAACATAGGAGTTACATCATAAGC
GTCGGGGGCAAAAAAATGGTCCAAATGACAAAGGTGTTAAACCATGAGCGTCGGGA
Found at i:6523 original size:86 final size:87
Alignment explanation
Indices: 6242--6576 Score: 347
Period size: 87 Copynumber: 3.9 Consensus size: 87
6232 CATAGGTGTC
* * * * *
6242 CATGAGCGTC-TGAGGCCAAATTGCCGTCGGAGTTACATCATGAGCGTCGGGGGCAAAAAAATGG
1 CATGAGCGTCGGGA-GCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCAAAAAAATGG
* * * *
6306 TCC-AAATGACAAAGGTGTTACAC
65 -CCAAAATGCCAAATGTGTTAAAT
* * * * * *
6329 CATGAGCGTCGGGCGCCAAAATACCATAGGTGTTACATCATAAGGGTCGGAGGCAAAAAAATTGC
1 CATGAGCGTCGGGAGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCAAAAAAATGGC
* *
6394 CATAATGCCGAATGTGTTAAAT
66 CAAAATGCCAAATGTGTTAAAT
* * * * *
6416 CATGAGCGTCGGGAACTAAAATGTCATAGGTGTTATATCATGAGCCTCGGGGGC-AAAAAATGGC
1 CATGAGCGTCGGGAGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCAAAAAAATGGC
*
6480 CAAAATGCCAAATGTGTTATAT
66 CAAAATGCCAAATGTGTTAAAT
* * * * *
6502 CATGTGTGTCGGGTGCCAAAATGCCATAGGTGTTACATCATTAGCGTCTGGGGC--AAAAATGGC
1 CATGAGCGTCGGGAGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCAAAAAAATGGC
* *
6565 TAAAATTCCAAA
66 CAAAATGCCAAA
6577 GGTTAACTAG
Statistics
Matches: 203, Mismatches: 43, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
85 19 0.09
86 74 0.36
87 109 0.54
88 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (87 bp):
CATGAGCGTCGGGAGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCAAAAAAATGGC
CAAAATGCCAAATGTGTTAAAT
Found at i:6726 original size:133 final size:133
Alignment explanation
Indices: 6443--6740 Score: 352
Period size: 133 Copynumber: 2.2 Consensus size: 133
6433 AAAATGTCAT
* * * * * * * *
6443 AGGTGTTATATCATGAGCCTCGGGGGCAAAAAATGGCCAAAATGCCAAATGTGTTATATCATGTG
1 AGGTGTTACATCATGAGCGTCGGGGGCCAAAAATGGCCAAAATGACAAATGTATTACACCATGAG
* * * * * *
6508 TGTCGGGTGCCAAAATGCCATAGGTGTTACATCATTAGCGTCTGGGGCAAAAATGGCTAAAATTC
66 CGTCGGGTGCCAAAATGCCATAGGTGTTACATAATGAGCGTCTGGGGCAAAAATAGCCAAAATGC
*
6573 CAA
131 AAA
* * * *
6576 AGGT-TAACTAGT-TTGAGCGTCGGGGGCCAAAACTGGCCAAAATGATAAATGTATTACACCATG
1 AGGTGTTAC-A-TCATGAGCGTCGGGGGCCAAAAATGGCCAAAATGACAAATGTATTACACCATG
6639 AGCGTC-GGTGCCAAAATGCCATAGGTGTTACATAATGAGCGTC-GGGAGCAAAAAATAGCCAAA
64 AGCGTCGGGTGCCAAAATGCCATAGGTGTTACATAATGAGCGTCTGGG-GC-AAAAATAGCCAAA
6702 ATGCAAA
127 ATGCAAA
*
6709 AGGTGTTACATCATGAGCGTCGGGTGCCAAAA
1 AGGTGTTACATCATGAGCGTCGGGGGCCAAAA
6741 TGCCATAGGT
Statistics
Matches: 137, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
131 3 0.02
132 40 0.29
133 90 0.66
134 4 0.03
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (133 bp):
AGGTGTTACATCATGAGCGTCGGGGGCCAAAAATGGCCAAAATGACAAATGTATTACACCATGAG
CGTCGGGTGCCAAAATGCCATAGGTGTTACATAATGAGCGTCTGGGGCAAAAATAGCCAAAATGC
AAA
Found at i:6769 original size:86 final size:85
Alignment explanation
Indices: 6589--6827 Score: 284
Period size: 86 Copynumber: 2.8 Consensus size: 85
6579 TTAACTAGTT
* * * *
6589 TGAGCGTCGGGGGCCAAAACTGGCCAAAATG-ATAAATGTATTACACCATGAGCGTC-GGTGCCA
1 TGAGCGTCGGGGGCAAAAAATGGCCAAAATGCA-AAAGGT-TTACAACATGAGCGTCGGGTGCCA
6652 AAATGCCATAGGTGTTACATAA
64 AAATGCCATAGGTGTTACATAA
* * *
6674 TGAGCGTCGGGAGCAAAAAATAGCCAAAATGCAAAAGGTGTTACATCATGAGCGTCGGGTGCCAA
1 TGAGCGTCGGGGGCAAAAAATGGCCAAAATGCAAAAGGT-TTACAACATGAGCGTCGGGTGCCAA
*
6739 AATGCCATAGGTGTTACATCA
65 AATGCCATAGGTGTTACATAA
* * * * * * * *
6760 TTAGCGTCGGGGGCAAAGAATGGCTAAAATACCAAAGGTTAACCAACATGAGCGTCGGGGGCTAA
1 TGAGCGTCGGGGGCAAAAAATGGCCAAAATGCAAAAGGTTTA-CAACATGAGCGTCGGGTGCCAA
6825 AAT
65 AAT
6828 TTGCCAAAAT
Statistics
Matches: 132, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
85 49 0.37
86 83 0.63
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (85 bp):
TGAGCGTCGGGGGCAAAAAATGGCCAAAATGCAAAAGGTTTACAACATGAGCGTCGGGTGCCAAA
ATGCCATAGGTGTTACATAA
Found at i:6837 original size:48 final size:48
Alignment explanation
Indices: 6734--6875 Score: 126
Period size: 48 Copynumber: 3.0 Consensus size: 48
6724 AGCGTCGGGT
* * * * * *
6734 GCCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGGC-AAAGAATG
1 GCCAAAATACCAAAGGTGTAACAACATGAGCGTCGGGGGCTAAA-ATTG
* *
6782 GCTAAAATACCAAAGGT-TAACCAACATGAGCGTCGGGGGCTAAAATTT
1 GCCAAAATACCAAAGGTGTAA-CAACATGAGCGTCGGGGGCTAAAATTG
* * * * * *
6830 GCCAAAATGCTAAAGGTGTTACACCATTAGCGTCGGGGGGTAAAAT
1 GCCAAAATACCAAAGGTGTAACAACATGAGCGTCGGGGGCTAAAAT
6876 GTCTTAGGTG
Statistics
Matches: 76, Mismatches: 15, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
47 2 0.03
48 69 0.91
49 5 0.07
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (48 bp):
GCCAAAATACCAAAGGTGTAACAACATGAGCGTCGGGGGCTAAAATTG
Found at i:6845 original size:134 final size:132
Alignment explanation
Indices: 6673--7808 Score: 502
Period size: 134 Copynumber: 8.8 Consensus size: 132
6663 GTGTTACATA
* * * * *
6673 ATGAGCGTCGGGAGCAAAAAATAGCCAAAATGCAAAAGGTGTTACATCATGAGCGTCGGGTGCCA
1 ATGAGCGTCGGGGGC-AAAAATTGCCAAAATGC-AAAGGTGTTACACCATGAGCGTCGGGAGACA
* * *
6738 AAATGCCATAGGTGTTACATCATTAGCGTCGGGGGCAAAGAATGGCTAAAATACCAAAGGTTAAC
64 AAATGCCATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATACCAAACGTTAAC
6803 CAAC
129 CAAC
* * * **
6807 ATGAGCGTCGGGGGCTAAAATTTGCCAAAATGCTAAAGGTGTTACACCATTAGCGTCGGGGGGTA
1 ATGAGCGTCGGGGGC-AAAAATTGCCAAAATGC-AAAGGTGTTACACCATGAGCGTCGGGAGACA
* * * * *
6872 AAATGTCTTAGGTGTTACACCATAAGCGTCGGGGGCAAAAAATGGCTAAAATCCCAAACGTTTAC
64 AAATGCCATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATACCAAACGTTAAC
*
6937 CACC
129 CAAC
* *
6941 ATGAGCGTCGGGGGCCAAAAA-TGACCAAAACGCAAAGGAGTTACACCATGAGCGTCGGGAGACA
1 ATGAGCGTCGGGGG-CAAAAATTG-CCAAAATGCAAAGGTGTTACACCATGAGCGTCGGGAGACA
* * * * ***
7005 AAATGCCATTGGTGTTACATCATGAGCGTCGGGGGC-CAAAATTGC----AT---ATGTGTT-A-
64 AAATGCCATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATACCAAACGTTAAC
7060 CATA-
129 CA-AC
* * ** * * * *
7064 ATGAGCGTCGGGGGAAAAAATGGATAAAATGCCAAATGTGTTACACCATAAGCGTCTGG-GCCAA
1 ATGAGCGTCGGGGGCAAAAATTGCCAAAATG-CAAAGGTGTTACACCATGAGCGTCGGGAGACAA
* * * * * * * *
7128 TATGCCATTGGTGTTACCTGC-TGAGCGTCGTGGGCAAAAAATGGCTAAAATGCTAAAGGTTAAC
65 AATGCCATAGGTGTTACAT-CATAAGCGTCGGGGGCAAAAAATGGCTAAAATACCAAACGTTAAC
*
7192 CACC
129 CAAC
* * * * * * *
7196 ATGGGCTTCGGGGGCCAAAAATGGCTAAAATGACAAAGGT-TAACTAGCATGAGCGTC-GGAGGC
1 ATGAGCGTCGGGGG-CAAAAATTGCCAAAATG-CAAAGGTGTTAC-ACCATGAGCGTCGGGA-GA
* * * * *
7259 CAAAACTGGCCAAAATTCCAAAGGTGTTACACCATAAGCGTCTGGAG-ACAAAAT-GC---CAT-
62 CAAAA-T-GCC---A-T----AGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATA
*** *
7318 --AGGTGTT-A-CATC
117 CCAAACGTTAACCAAC
* ** * * * * *
7330 ATTAGAAT-GGGGGCCAAAA-TGCC---AT---AA-GTATTACATCATGAGCGTCGGGGGAATAA
1 ATGAGCGTCGGGGGCAAAAATTGCCAAAATGCAAAGGTGTTACACCATGAGCGTCGGGAG-ACAA
* ** * *
7386 AATGGCCAAAATGGCAAAGGTGATACATCATAAGCCACGGGGGAAAAAAATGGCTAAAATGCCGA
65 AAT-GCC---AT-----AGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATACC-A
** *
7451 AGGTGTTAA--ATC
120 A-ACGTTAACCAAC
* * ** * * *
7463 ATGATCGTCAGGAACTAAAA-TGCC---AT----AGGTGTTACATCATGAGCGTC-GGACGCCAA
1 ATGAGCGTCGGGGGCAAAAATTGCCAAAATGCAAAGGTGTTACACCATGAGCGTCGGGA-GACAA
* * * * * *
7519 AATGCCATAGGTGTTATATCATTAGCGTCGGGGGCAAAGAATGACTAAAATGCCAAAGGTTAACC
65 AATGCCATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATACCAAACGTTAACC
*
7584 ACC
130 AAC
* * * *
7587 ATGAGCGTCGGGGGCCAAAAA-TGACCAAAACGCCAAAGGAGTTACAGCATGAGCGTTGGGAGAC
1 ATGAGCGTCGGGGG-CAAAAATTG-CCAAAATG-CAAAGGTGTTACACCATGAGCGTCGGGAGAC
* * * ****
7651 AAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGC-CAAAAT-G-T--CAT---TGGTGTT-A
63 AAAATGCCATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATACCAAACGTTAA
7707 -CATA-
128 CCA-AC
* * * *
7711 ATGAGCGTCGGGGG-AAAAATGGCCAAAATGCCAAATGTGTTACACCATGAACGTCGGG-GCCAA
1 ATGAGCGTCGGGGGCAAAAATTGCCAAAATG-CAAAGGTGTTACACCATGAGCGTCGGGAGACAA
* * *
7774 AATGCCATAAGTGTTACATTATGAGCGTCGGGGGC
65 AATGCCATAGGTGTTACATCATAAGCGTCGGGGGC
7809 CAAACATTCC
Statistics
Matches: 782, Mismatches: 155, Indels: 143
0.72 0.14 0.13
Matches are distributed among these distances:
121 37 0.05
122 85 0.11
123 97 0.12
124 84 0.11
125 14 0.02
126 5 0.01
127 2 0.00
128 6 0.01
129 5 0.01
130 4 0.01
131 4 0.01
132 35 0.04
133 119 0.15
134 242 0.31
135 6 0.01
136 7 0.01
139 3 0.00
140 1 0.00
142 2 0.00
143 7 0.01
144 17 0.02
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (132 bp):
ATGAGCGTCGGGGGCAAAAATTGCCAAAATGCAAAGGTGTTACACCATGAGCGTCGGGAGACAAA
ATGCCATAGGTGTTACATCATAAGCGTCGGGGGCAAAAAATGGCTAAAATACCAAACGTTAACCA
AC
Found at i:6948 original size:48 final size:47
Alignment explanation
Indices: 6885--6999 Score: 142
Period size: 48 Copynumber: 2.4 Consensus size: 47
6875 TGTCTTAGGT
* * *
6885 GTTACACCATAAGCGTCGGGGGCAAAAAATGGCTAAAATCCCAAACG-
1 GTTACACCATGAGCGTCGGGGGCAAAAAATGACCAAAA-CCCAAACGA
* * * *
6932 TTTACCACCATGAGCGTCGGGGGCCAAAAATGACCAAAACGCAAAGGA
1 GTTA-CACCATGAGCGTCGGGGGCAAAAAATGACCAAAACCCAAACGA
6980 GTTACACCATGAGCGTCGGG
1 GTTACACCATGAGCGTCGGG
7000 AGACAAAATG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 25 0.43
48 33 0.57
ACGTcount: A:0.35, C:0.24, G:0.26, T:0.15
Consensus pattern (47 bp):
GTTACACCATGAGCGTCGGGGGCAAAAAATGACCAAAACCCAAACGA
Found at i:7007 original size:37 final size:38
Alignment explanation
Indices: 6966--7037 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 38
6956 CAAAAATGAC
6966 CAAAACG-CAAAGGAGTTACACCATGAGCGTCGGGAGA
1 CAAAACGCCAAAGGAGTTACACCATGAGCGTCGGGAGA
* ** * *
7003 CAAAATGCCATTGGTGTTACATCATGAGCGTCGGG
1 CAAAACGCCAAAGGAGTTACACCATGAGCGTCGGG
7038 GGCCAAAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 6 0.21
38 23 0.79
ACGTcount: A:0.32, C:0.21, G:0.29, T:0.18
Consensus pattern (38 bp):
CAAAACGCCAAAGGAGTTACACCATGAGCGTCGGGAGA
Found at i:7007 original size:47 final size:46
Alignment explanation
Indices: 6885--7007 Score: 122
Period size: 47 Copynumber: 2.6 Consensus size: 46
6875 TGTCTTAGGT
* * * *
6885 GTTACACCATAAGCGTCGGGGGCAAAAAATGGCTAAAATCCCAAACG
1 GTTACACCATGAGCGTCGGGGAC-AAAAATGACCAAAATCCCAAACG
* * * *
6932 TTTACCACCATGAGCGTCGGGGGCCAAAAATGACCAAAA-CGCAAAGG
1 GTTA-CACCATGAGCGTC-GGGGACAAAAATGACCAAAATCCCAAACG
6979 AGTTACACCATGAGCGTCGGGAGACAAAA
1 -GTTACACCATGAGCGTCGGG-GACAAAA
7008 TGCCATTGGT
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
46 3 0.05
47 28 0.44
48 27 0.43
49 5 0.08
ACGTcount: A:0.37, C:0.24, G:0.25, T:0.14
Consensus pattern (46 bp):
GTTACACCATGAGCGTCGGGGACAAAAATGACCAAAATCCCAAACG
Found at i:7022 original size:38 final size:37
Alignment explanation
Indices: 6980--7085 Score: 133
Period size: 38 Copynumber: 2.8 Consensus size: 37
6970 ACGCAAAGGA
* *
6980 GTTACACCATGAGCGTCGGGAGACAAAATGCCAT-TGGT
1 GTTACATCATGAGCGTCGGGGGACAAAATG-CATAT-GT
*
7018 GTTACATCATGAGCGTCGGGGGCCAAAATTGCATATGT
1 GTTACATCATGAGCGTCGGGGGACAAAA-TGCATATGT
* *
7056 GTTACATAATGAGCGTCGGGGGAAAAAATG
1 GTTACATCATGAGCGTCGGGGGACAAAATG
7086 GATAAAATGC
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
37 2 0.03
38 55 0.92
39 3 0.05
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (37 bp):
GTTACATCATGAGCGTCGGGGGACAAAATGCATATGT
Found at i:7093 original size:85 final size:85
Alignment explanation
Indices: 7016--7180 Score: 201
Period size: 85 Copynumber: 1.9 Consensus size: 85
7006 AATGCCATTG
* * *
7016 GTGTTACATCATGAGCGTCGGGGGCCAAAATTG-CATAT-GTGTTACATAATGAGCGTCG-GGGG
1 GTGTTACACCATAAGCGTC-GGGGCCAAAA-TGCCAT-TGGTGTTACATAATGAGCGTCGTGGGC
7078 AAAAAATGGATAAAATGCCAAAT
63 AAAAAATGGATAAAATGCCAAAT
* * * **
7101 GTGTTACACCATAAGCGTCTGGGCCAATATGCCATTGGTGTTACCTGCTGAGCGTCGTGGGCAAA
1 GTGTTACACCATAAGCGTCGGGGCCAAAATGCCATTGGTGTTACATAATGAGCGTCGTGGGCAAA
*
7166 AAATGGCTAAAATGC
66 AAATGGATAAAATGC
7181 TAAAGGTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
83 3 0.04
84 28 0.41
85 37 0.54
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (85 bp):
GTGTTACACCATAAGCGTCGGGGCCAAAATGCCATTGGTGTTACATAATGAGCGTCGTGGGCAAA
AAATGGATAAAATGCCAAAT
Found at i:7234 original size:48 final size:47
Alignment explanation
Indices: 7149--7300 Score: 153
Period size: 48 Copynumber: 3.2 Consensus size: 47
7139 TGTTACCTGC
* *
7149 TGAGCGTCGTGGGCAAAAAATGGCTAAAATGCTAAAGGTTAACCACCA
1 TGAGCGTCGGGGGCCAAAAATGGCTAAAATGC-AAAGGTTAACCACCA
* * * *
7197 TGGGCTTCGGGGGCCAAAAATGGCTAAAATGACAAAGGTTAACTAGCA
1 TGAGCGTCGGGGGCCAAAAATGGCTAAAATG-CAAAGGTTAACCACCA
* * * * *
7245 TGAGCGTCGGAGGCCAAAACTGGCCAAAATTCCAAAGGTGTTA-CACCA
1 TGAGCGTCGGGGGCCAAAAATGGCTAAAA-TGCAAAGGT-TAACCACCA
*
7293 TAAGCGTC
1 TGAGCGTC
7301 TGGAGACAAA
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
48 81 0.95
49 4 0.05
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.18
Consensus pattern (47 bp):
TGAGCGTCGGGGGCCAAAAATGGCTAAAATGCAAAGGTTAACCACCA
Found at i:7413 original size:48 final size:48
Alignment explanation
Indices: 7341--7471 Score: 140
Period size: 48 Copynumber: 2.7 Consensus size: 48
7331 TTAGAATGGG
*
7341 GGCCAAAATGCCATAA-GT-ATTACATCATGAGCGTCGGGGGAATAAAAT
1 GGCCAAAATGCCA-AAGGTGA-TACATCATGAGCGTCGGGGGAAAAAAAT
* * **
7389 GGCCAAAATGGCAAAGGTGATACATCATAAGCCACGGGGGAAAAAAAT
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGAAAAAAAT
* * * * *
7437 GGCTAAAATGCCGAAGGTGTTAAATCATGATCGTC
1 GGCCAAAATGCCAAAGGTGATACATCATGAGCGTC
7472 AGGAACTAAA
Statistics
Matches: 67, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
47 2 0.03
48 64 0.96
49 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.19
Consensus pattern (48 bp):
GGCCAAAATGCCAAAGGTGATACATCATGAGCGTCGGGGGAAAAAAAT
Found at i:7493 original size:38 final size:38
Alignment explanation
Indices: 7439--7549 Score: 136
Period size: 38 Copynumber: 2.9 Consensus size: 38
7429 AAAAAAATGG
*
7439 CTAAAATGCCGA-AGGTGTTAAATCATGATCGTCAGGA-A
1 CTAAAATGCC-ATAGGTGTTAAATCATGAGCGTC-GGACA
* *
7477 CTAAAATGCCATAGGTGTTACATCATGAGCGTCGGACG
1 CTAAAATGCCATAGGTGTTAAATCATGAGCGTCGGACA
* * *
7515 CCAAAATGCCATAGGTGTTATATCATTAGCGTCGG
1 CTAAAATGCCATAGGTGTTAAATCATGAGCGTCGG
7550 GGGCAAAGAA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
37 4 0.06
38 61 0.94
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (38 bp):
CTAAAATGCCATAGGTGTTAAATCATGAGCGTCGGACA
Found at i:7568 original size:86 final size:85
Alignment explanation
Indices: 7476--9725 Score: 835
Period size: 86 Copynumber: 26.5 Consensus size: 85
7466 ATCGTCAGGA
* * * *
7476 ACTAAAATGCCATAGGTGTTACATCATGAGCGTCGGACGCCAAAATGCCATAGGTGTTATATCAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
*
7541 TAGCGTCGGGGGCAAAGAATG
66 GAGCGTCGGGGGCAAA-AATG
* * *
7562 ACTAAAATGCCAAAGGT-TAACCACCATGAGCGTCGGGGGCCAAAAATGACCAAAACGCCAAAGG
1 ACTAAAATGCCAAAGGTGTTA-CACCATGAGCGTC--GGG-C------G-CCAAAATGCCATAGG
* * *
7626 AGTTACAGCATGAGCGT--TGGG-----A-G
55 TGTTACATCATGAGCGTCGGGGGCAAAAATG
* * * * * *
7649 AC-AAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCAAAATGTCATTGGTGTTACATAAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
7713 GAGCGTCGGGGG-AAAAATG
66 GAGCGTCGGGGGCAAAAATG
* * * * * *
7732 GCCAAAATGCCAAATGTGTTACACCATGAACGTCGGG-GCCAAAATGCCATAAGTGTTACATTAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
*
7796 GAGCGTCGGGGGC--CAA--
66 GAGCGTCGGGGGCAAAAATG
* * * * **
7812 AC----ATTCCATACGTGTTACACCATGAGCGTCGGGTGCCAAACGGCCATAGGTGTTACATCAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
*
7873 TAGCGTCGGGGGCAAAAATTG
66 GAGCGTCGGGGGCAAAAA-TG
* * *
7894 GCTAAAATGCCAAAGGT-TAAGCAACATGAGCGTCGGGCGCCAAAAATGGCCAAAATGCTAAAGG
1 ACTAAAATGCCAAAGGTGTTA-CACCATGAGCGTCGGGCGCC-AAAAT-GCC---A---T--AGG
* *
7958 TGTTA-AACAATGAGTGTCGGGGGC-------
55 TGTTACATC-ATGAGCGTCGGGGGCAAAAATG
* * ** * *
7982 -C-ATAATGTCGTAGGTGTTACACCATGAGTGTCGGGGGCCAAAACTGGCCAAAATCCTAAAGGT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAA-T-GCC---A---T--AGGT
* * *
8045 GTTACACCATGAGCGTCTGGGGCCAAAACTG
56 GTTACATCATGAGCGTC-GGGGGCAAAAATG
** * * *
8076 GTTAAAATGCTAAAGGTGTTACATCATGAGCGTCGGGTGCCAAAATGCCATAGGTGTTACATCAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
*
8141 TAGCGTCGGGGGCAAAGAATG
66 GAGCGTCGGGGGCAAA-AATG
* * * *
8162 GCTAAAATGCCAAAGGT-TAACCAGCATGAGCGTCGGGGGCCAAAACTGGCCAAAATGCTAAAGG
1 ACTAAAATGCCAAAGGTGTTA-CACCATGAGCGTCGGGCGCCAAAA-T-GCC---A---T--AGG
*
8226 TGTTACACCATGAGCGTC---GG----AA-G
55 TGTTACATCATGAGCGTCGGGGGCAAAAATG
** * * * *
8249 -CTAAAATGCCGTAGATGTTACATCATGAGCGTCGGGGGCAAAAAATGGCTAAAATGCCAAAGGT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTC--GGGC--------GCCAAAATGCCATAGGT
* *
8313 -TAACTACCATGAGCGTCGGGGGCCAAAAATG
56 GTTAC-ATCATGAGCGTCGGGGG-CAAAAATG
* * * * * * * * *
8344 ACCAAAACGCCAAAGGAGTTACTCCATGAGTGTCGGGAGACGAAATGCCATAGGTGGTACATCAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
8409 GAGCGTCGGGGGC-------
66 GAGCGTCGGGGGCAAAAATG
* ** * *
8422 -C-AAAATGCCATAGGTGTTACATAATGAGCGTCAGGGGAAAAAATTGCCAAAATGCCATAAGTG
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTC--GGG-------CGCCAAAATGCCATAGGTG
*
8485 TTACATTATGAGCGTC---GG------TG
57 TTACATCATGAGCGTCGGGGGCAAAAATG
* * * * * *
8505 -CCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGGCAAAAATTGGCTAAAATGCCAAAGGT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTC--GGGC--------GCCAAAATGCCATAGGT
* * *
8569 -TAAGCAACATGAGCGTCGGGCGCCAAAAATG
56 GTTA-CATCATGAGCGTCGGG-GGCAAAAATG
* * * * * * * * * * *
8600 GCCAAAATGCTAAAGGTGTTAAACAATGAGTGTCGGGGGCCATAATGTCGTAGGTGTTACACCAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
* *
8665 GAGTGTCGGGGGCCAAAACTG
66 GAGCGTCGGGGG-CAAAAATG
* * * * * *
8686 GCCAAAATGCCTAAAGGTGTTACACCATAAGCGTCGGG-ACAAAAATGACATAGGTGTTACATCA
1 ACTAAAATGCC-AAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCA
8750 TGAGCGTC--GGG-----A-G
65 TGAGCGTCGGGGGCAAAAATG
* * * * *
8763 AC-GAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
8827 GAGCGTCGGGGG-AAAAATG
66 GAGCGTCGGGGGCAAAAATG
* * * * * *
8846 GCCAAAATGCCAAATGTGTTACACCATGAGTGTCGGG-GCCAAAATGCCATAAGTGTTACATTAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
8910 GAGCGTCGGGGGCAAAAA--
66 GAGCGTCGGGGGCAAAAATG
* * *
8928 A-T----T-CCATAGGTGTTACACCATGAGCGTCGGGTGCCAAAAGGCCATAGGTGTTACATCAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
8987 GAGCGTCGGGGGC-------
66 GAGCGTCGGGGGCAAAAATG
* * ** * * * * *
9000 -C-AAAATGCCATAGTTGTTACATAATGAGCGTCAGGGGAAAAAATGGTCAAAACGCCAAATGTG
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTC--GGG-------CGCCAAAATGCCATAGGTG
*
9063 TTACAACATGAGCGTC-GGGGC-------
57 TTACATCATGAGCGTCGGGGGCAAAAATG
** * * * *
9084 -C-AAAATGCCATAA-GTGTTACATTATGAGCGTCGGGGGCAAAAAATTCCATAGGTGTTACACC
1 ACTAAAATGCCA-AAGGTGTTACACCATGAGCGTCGGGCGC-CAAAATGCCATAGGTGTTACATC
9146 ATGAGCGTC--GGG------TG
64 ATGAGCGTCGGGGGCAAAAATG
* * * * * * * *
9160 -CCAAAAGGCCATAGGTGTTACATCATTAGCGTCGGGGGCAAAAATTGGCTAAAATGCAAAAGGT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTC--GGGC--------GCCAAAATGCCATAGGT
* * * *
9224 -TAAGCAGCATGGGCGTCGGGGGCCAAAAAAG
56 GTTA-CATCATGAGCGTCGGGGG-CAAAAATG
* * * * * * * * * * * * *
9255 GCCAAAATTCTAAAGTTGTTAAAACATGAGTGTCGGGGGCCATAATGTCGTAGGTGTTACACCAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
* * *
9320 GAGTGTCGGGGGCAATACTG
66 GAGCGTCGGGGGCAAAAATG
* * * * * * * *
9340 GCCAAAAGGCTAAAGGTGTTACACCATGAGCGTCGGGTGCTAAAATGCCGTAGGTGTTACATAAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
9405 GAGCGTCGGGGGCAAAAAATG
66 GAGCGTCGGGGGC-AAAAATG
* * * * *
9426 GCTACAATGCCAAAGGTGTTACACCATAAGCGTCGGG-GCAAAAATGACATAGGTGTTACATCAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
* * *
9490 GAGCATCGGGGGCCAAAACTT
66 GAGCGTCGGGGG-CAAAAATG
* * * * ** * **
9511 TCCAAAATGCTAAAGGTGTTACACCATGAACGTC-GAAGCCAAAATGGCATAGGTGTTACAAAAT
1 ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
*
9575 GAGCGTCGGGAGCAAAAAT-
66 GAGCGTCGGGGGCAAAAATG
* * * ** * * *
9594 AGCCAAAATGCCAAGGGTGTAACATTATGAGCGTCGGGTGCCAAAATGCCATAGTTGTTACATTA
1 A-CTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCA
* *
9659 TTAGCGTCGGTGGCAAAAAATG
65 TGAGCGTCGGGGGC-AAAAATG
* * * * *
9681 GCTAAAATGCCAATGGT-TAACTAGCATGAGCGTCGGGGGCCAAAA
1 ACTAAAATGCCAAAGGTGTTAC-ACCATGAGCGTCGGGCGCCAAAA
9726 ACTTGGCCAA
Statistics
Matches: 1664, Mismatches: 312, Indels: 376
0.71 0.13 0.16
Matches are distributed among these distances:
75 29 0.02
76 188 0.11
77 102 0.06
78 12 0.01
79 5 0.00
80 1 0.00
82 10 0.01
83 77 0.05
84 171 0.10
85 317 0.19
86 461 0.28
87 52 0.03
88 18 0.01
89 4 0.00
91 4 0.00
93 2 0.00
94 22 0.01
95 9 0.01
96 180 0.11
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.20
Consensus pattern (85 bp):
ACTAAAATGCCAAAGGTGTTACACCATGAGCGTCGGGCGCCAAAATGCCATAGGTGTTACATCAT
GAGCGTCGGGGGCAAAAATG
Found at i:7609 original size:172 final size:170
Alignment explanation
Indices: 7203--8120 Score: 842
Period size: 172 Copynumber: 5.3 Consensus size: 170
7193 ACCATGGGCT
* * * *
7203 TCGGGGGCCAAAAATGGCTAAAATGACAAAGGTTAACTAGCATGAGCGTCGGAGGCCAAAACTGG
1 TCGGGGG-CAAAAATGGCTAAAATGCCAAAGGTTAAC-ACCATGAGCGTCGGGGGCCAAAAATGG
* * * * *
7268 CCAAAATTCCAAAGGTGTTACACCATAAGCGTCTGGAGACAAAATGCCATAGGTGTTACATCATT
64 CCAAAATGCCAAAGGTGTTACATCATGAGCGTCGGGAGACAAAATGCCATAGGTGTTACATCATG
** * *
7333 AGAAT-GGGGGCCAAAATGCCATAAGTATTACATCATGAGCG
129 AGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCG
* * * * * * ** **
7374 TCGGGGGAATAAAATGGCCAAAATGGCAAAGGTGATACATCATAAGCCACGGGGGAAAAAAATGG
1 TCGGGGGCA-AAAATGGCTAAAATGCCAAAGGTTA-ACACCATGAGCGTCGGGGGCCAAAAATGG
* * * * *
7439 CTAAAATGCCGAAGGTGTTAAATCATGATCGTCAGGA-ACTAAAATGCCATAGGTGTTACATCAT
64 CCAAAATGCCAAAGGTGTTACATCATGAGCGTCGGGAGAC-AAAATGCCATAGGTGTTACATCAT
** * *
7503 GAGCGTCGGACGCCAAAATGCCATAGGTGTTATATCATTAGCG
128 GAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCG
* *
7546 TCGGGGGCAAAGAATGACTAAAATGCCAAAGGTTAACCACCATGAGCGTCGGGGGCCAAAAATGA
1 TCGGGGGCAAA-AATGGCTAAAATGCCAAAGGTTAA-CACCATGAGCGTCGGGGGCCAAAAATGG
* * * *
7611 CCAAAACGCCAAAGGAGTTACAGCATGAGCGTTGGGAGACAAAATGCCATAGGTGTTACATCATG
64 CCAAAATGCCAAAGGTGTTACATCATGAGCGTCGGGAGACAAAATGCCATAGGTGTTACATCATG
* * *
7676 AGCGTCGGGGGCCAAAATGTCATTGGTGTTACATAATGAGCG
129 AGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCG
* *
7718 TCGGGGG-AAAAATGGCCAAAATGCCAAATGTGTT-ACACCATGAACGTC-GGGGCC-AAAAT-G
1 TCGGGGGCAAAAATGGCTAAAATGCCAAA-G-GTTAACACCATGAGCGTCGGGGGCCAAAAATGG
* * * * * *
7778 CC---AT----AA-GTGTTACATTATGAGCGTCGGGGGCCAAACATTCCATACGTGTTACACCAT
64 CCAAAATGCCAAAGGTGTTACATCATGAGCGTCGGGAGACAAA-ATGCCATAGGTGTTACATCAT
* ** *
7835 GAGCGTCGGGTGCCAAACGGCCATAGGTGTTACATCATTAGCG
128 GAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCG
* *
7878 TCGGGGGCAAAAATTGGCTAAAATGCCAAAGGTTAAGCAACATGAGCGTCGGGCGCCAAAAATGG
1 TCGGGGGCAAAAA-TGGCTAAAATGCCAAAGGTTAA-CACCATGAGCGTCGGGGGCCAAAAATGG
* * * * * * * * *
7943 CCAAAATGCTAAAGGTGTTA-AACAATGAGTGTCGGGGGCCATAATGTCGTAGGTGTTACACCAT
64 CCAAAATGCCAAAGGTGTTACATC-ATGAGCGTCGGGAGACAAAATGCCATAGGTGTTACATCAT
* *
8007 GAGTGTCGGGGGCCAAAACTGGCCAAAATCCTAAAGGTGTTACACCATGAGCG
128 GAGCGTCGGGGGCCAAAA-T-GCC---A---T--AGGTGTTACATCATGAGCG
* * * * * * *
8060 TCTGGGGCCAAAACTGGTTAAAATGCTAAAGGTGTTACATCATGAGCGTCGGGTGCCAAAA
1 TC-GGGGGCAAAAATGGCTAAAATGCCAAAGGT-TAACACCATGAGCGTCGGGGGCCAAAA
8121 TGCCATAGGT
Statistics
Matches: 606, Mismatches: 103, Indels: 65
0.78 0.13 0.08
Matches are distributed among these distances:
159 23 0.04
160 66 0.11
161 7 0.01
162 26 0.04
163 5 0.01
164 6 0.01
165 3 0.00
167 2 0.00
168 7 0.01
169 6 0.01
170 31 0.05
171 112 0.18
172 213 0.35
173 25 0.04
174 3 0.00
177 1 0.00
180 1 0.00
182 58 0.10
183 11 0.02
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.20
Consensus pattern (170 bp):
TCGGGGGCAAAAATGGCTAAAATGCCAAAGGTTAACACCATGAGCGTCGGGGGCCAAAAATGGCC
AAAATGCCAAAGGTGTTACATCATGAGCGTCGGGAGACAAAATGCCATAGGTGTTACATCATGAG
CGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCG
Found at i:7638 original size:48 final size:47
Alignment explanation
Indices: 7515--7642 Score: 134
Period size: 48 Copynumber: 2.7 Consensus size: 47
7505 GCGTCGGACG
* * * *
7515 CCAAAATGCCATAGGTGTTATATCATTAGCGTCGGGGGCAAAGAATGA
1 CCAAAATGCCAAAGG-GTTACACCATGAGCGTCGGGGGCAAAGAATGA
*
7563 CTAAAATGCCAAA-GGTTAACCACCATGAGCGTCGGGGGCCAAA-AATGA
1 CCAAAATGCCAAAGGGTT-A-CACCATGAGCGTCGGGGG-CAAAGAATGA
* *
7611 CCAAAACGCCAAAGGAGTTACAGCATGAGCGT
1 CCAAAATGCCAAAGG-GTTACACCATGAGCGT
7643 TGGGAGACAA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
46 3 0.04
47 2 0.03
48 53 0.79
49 6 0.09
50 3 0.04
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.17
Consensus pattern (47 bp):
CCAAAATGCCAAAGGGTTACACCATGAGCGTCGGGGGCAAAGAATGA
Found at i:7692 original size:38 final size:38
Alignment explanation
Indices: 7611--9204 Score: 710
Period size: 38 Copynumber: 38.2 Consensus size: 38
7601 CCAAAAATGA
* * * * * *
7611 CCAAAACGCCAAAGGAGTTACAGCATGAGCGTTGGGAG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
*
7649 ACAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* * *
7687 CCAAAATGTCATTGGTGTTACATAATGAGCGTCGGGGGAAAAATGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTC--GGG------GG
* * * *
7733 CCAAAATGCCAAATGTGTTACACCATGAACGTC-GGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* *
7770 CCAAAATGCCATAAGTGTTACATTATGAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* * * *
7808 CCAAACATTCCATACGTGTTACACCATGAGCGTCGGGTG
1 CCAAA-ATGCCATAGGTGTTACATCATGAGCGTCGGGGG
** *
7847 CCAAACGGCCATAGGTGTTACATCATTAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* * * *
7885 CAAAAATTGGCTAAAATGCCAAAGGT-TAAGCAACATGAGCGTCGGGCG
1 C---------C-AAAATGCCATAGGTGTTA-CATCATGAGCGTCGGGGG
* *
7933 CCAAAAATGGCCAAAATGCTAAAGGTGTTA-AACAATGAGTGTCGGGGG
1 CC-AAAAT-GCC---A---T--AGGTGTTACATC-ATGAGCGTCGGGGG
* * * * *
7981 CCATAATGTCGTAGGTGTTACACCATGAGTGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* *
8019 CCAAAACTGGCCAAAATCCTAAAGGTGTTACACCATGAGCGTCTGGGGC
1 CCAAAA-T-GCC---A---T--AGGTGTTACATCATGAGCGTC-GGGGG
* * *
8068 CAAAACTGGTTAAAATGCTAAAGGTGTTACATCATGAGCGTCGGGTG
1 C----C-----AAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
*
8115 CCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* * *
8153 CAAAGAATGGCTAAAATGCCAAAGGT-TAACCAGCATGAGCGTCGGGGG
1 C---------C-AAAATGCCATAGGTGTTA-CATCATGAGCGTCGGGGG
* **
8201 CCAAAACTGGCCAAAATGCTAAAGGTGTTACACCATGAGCGTCGGAAG
1 CCAAAA-T-GCC---A---T--AGGTGTTACATCATGAGCGTCGGGGG
* * *
8249 CTAAAATGCCGTAGATGTTACATCATGAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* * *
8287 CAAAAAATGGCTAAAATGCCAAAGGT-TAACTACCATGAGCGTCGGGGG
1 C---------C-AAAATGCCATAGGTGTTAC-ATCATGAGCGTCGGGGG
* * * *
8335 CCAAAAATGACCAAAACGCCAAAGGAGTTAC-TCCATGAGTGTCGGGAG
1 CC-AAAAT---------GCCATAGGTGTTACAT-CATGAGCGTCGGGGG
* * *
8383 ACGAAATGCCATAGGTGGTACATCATGAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
*
8421 CCAAAATGCCATAGGTGTTACATAATGAGCGTCAGGGGAAAAAATTG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTC-GGGG--------G
* * *
8468 CCAAAATGCCATAAGTGTTACATTATGAGCGTC-GGTG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
*
8505 CCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* * * *
8543 CAAAAATTGGCTAAAATGCCAAAGGT-TAAGCAACATGAGCGTCGGGCG
1 C---------C-AAAATGCCATAGGTGTTA-CATCATGAGCGTCGGGGG
* *
8591 CCAAAAATGGCCAAAATGCTAAAGGTGTTA-AACAATGAGTGTCGGGGG
1 CC-AAAAT-GCC---A---T--AGGTGTTACATC-ATGAGCGTCGGGGG
* * * * *
8639 CCATAATGTCGTAGGTGTTACACCATGAGTGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* * *
8677 CCAAAACTGGCCAAAATGCCTAAAGGTGTTACACCATAAGCGTC-GGGA
1 CCAAAA-T-GCC---A----T--AGGTGTTACATCATGAGCGTCGGGGG
* * *
8725 CAAAAATGACATAGGTGTTACATCATGAGCGTCGGGAG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* *
8763 ACGAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
*
8801 CCAAAATGCCATAGGTGTTACATAATGAGCGTCGGGGGAAAAATGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTC--GGG------GG
* * * *
8847 CCAAAATGCCAAATGTGTTACACCATGAGTGTC-GGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* *
8884 CCAAAATGCCATAAGTGTTACATTATGAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* * * *
8922 CAAAAAATTCCATAGGTGTTACACCATGAGCGTCGGGTG
1 C-CAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
*
8961 CCAAAAGGCCATAGGTGTTACATCATGAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* *
8999 CCAAAATGCCATAGTTGTTACATAATGAGCGTCAGGGGAAAAAATGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTC--GGG-------GG
* * * * *
9046 TCAAAACGCCAAATGTGTTACAACATGAGCGTC-GGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* *
9083 CCAAAATGCCATAAGTGTTACATTATGAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* * * *
9121 CAAAAAATTCCATAGGTGTTACACCATGAGCGTCGGGTG
1 C-CAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
* *
9160 CCAAAAGGCCATAGGTGTTACATCATTAGCGTCGGGGG
1 CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
*
9198 CAAAAAT
1 CCAAAAT
9205 TGGCTAAAAT
Statistics
Matches: 1197, Mismatches: 195, Indels: 328
0.70 0.11 0.19
Matches are distributed among these distances:
37 139 0.12
38 440 0.37
39 129 0.11
40 25 0.02
43 9 0.01
44 2 0.00
45 2 0.00
46 68 0.06
47 97 0.08
48 244 0.20
49 33 0.03
53 2 0.00
56 2 0.00
57 1 0.00
58 4 0.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.20
Consensus pattern (38 bp):
CCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG
Found at i:7837 original size:122 final size:123
Alignment explanation
Indices: 7583--7844 Score: 350
Period size: 122 Copynumber: 2.1 Consensus size: 123
7573 AAAGGTTAAC
* * *
7583 CACCATGAGCGTCGGGGGCCAAAAATGACCAAAACGCCAAAGGAGTTACAGCATGAGCGTTGGGA
1 CACCATGAGCGTCGGGGG-CAAAAATGACCAAAACGCCAAAGGAGTTACACCATGAACGTCGGGA
* **
7648 GACAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCAAAATGTCATTGGTGTTA
65 GACAAAATGCCATAAGTGTTACATCATGAGCGTCGGGGGCCAAAATGTCATACGTGTTA
** * * * *
7707 CATAATGAGCGTCGGGGG-AAAAATGGCCAAAATGCCAAATGTGTTACACCATGAACGTCGGG-G
1 CACCATGAGCGTCGGGGGCAAAAATGACCAAAACGCCAAAGGAGTTACACCATGAACGTCGGGAG
* *
7770 CCAAAATGCCATAAGTGTTACATTATGAGCGTCGGGGGCCAAACAT-TCCATACGTGTTA
66 ACAAAATGCCATAAGTGTTACATCATGAGCGTCGGGGGCCAAA-ATGT-CATACGTGTTA
7829 CACCATGAGCGTCGGG
1 CACCATGAGCGTCGGG
7845 TGCCAAACGG
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
121 42 0.35
122 62 0.52
124 16 0.13
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (123 bp):
CACCATGAGCGTCGGGGGCAAAAATGACCAAAACGCCAAAGGAGTTACACCATGAACGTCGGGAG
ACAAAATGCCATAAGTGTTACATCATGAGCGTCGGGGGCCAAAATGTCATACGTGTTA
Found at i:7949 original size:48 final size:47
Alignment explanation
Indices: 7854--9773 Score: 483
Period size: 48 Copynumber: 44.7 Consensus size: 47
7844 GTGCCAAACG
* * * * *
7854 GCCATAGGTGTTACATCATTAGCGTCGGGGGCAAAAATTGGCTAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAA-TGGCCAAAAT
* *
7902 GCCAAAGGT-TAAGCAACATGAGCGTCGGGCGCCAAAAATGGCCAAAAT
1 GCCAAAGGTGTTA-CACCATGAGCGTCGGG-GCCAAAAATGGCCAAAAT
* * * * *
7950 GCTAAAGGTGTTAAACAATGAGTGTC-GGG--------GGCCATAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* ** * *
7988 GTCGTAGGTGTTACACCATGAGTGTCGGGGGCCAAAACTGGCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTC-GGGGCCAAAAATGGCCAAAAT
* **
8036 -CCTAAAGGTGTTACACCATGAGCGTCTGGGGCCAAAACTGGTTAAAAT
1 GCC-AAAGGTGTTACACCATGAGCGTC-GGGGCCAAAAATGGCCAAAAT
* *
8084 GCTAAAGGTGTTACATCATGAGCGTC-GGG-------T-GCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* * * * *
8122 GCCATAGGTGTTACATCATTAGCGTCGGGGGCAAAGAATGGCTAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAA-AATGGCCAAAAT
* * *
8170 GCCAAAGGT-TAACCAGCATGAGCGTCGGGGGCCAAAACTGGCCAAAAT
1 GCCAAAGGTGTTA-CACCATGAGCGTC-GGGGCCAAAAATGGCCAAAAT
* *
8218 GCTAAAGGTGTTACACCATGAGCGTC--GG-----AA--GCTAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
** * * * *
8256 GCCGTAGATGTTACATCATGAGCGTCGGGGGCAAAAAATGGCTAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTC-GGGGCCAAAAATGGCCAAAAT
* * *
8304 GCCAAAGGT-TAACTACCATGAGCGTCGGGGGCCAAAAATGACCAAAAC
1 GCCAAAGGTGTTAC-ACCATGAGCGTC-GGGGCCAAAAATGGCCAAAAT
* * * * *
8352 GCCAAAGGAGTTACTCCATGAGTGTC-GGG------A--GACGAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* * *
8390 GCCATAGGTGGTACATCATGAGCGTC-GGG--------GGCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* ** * *
8428 GCCATAGGTGTTACATAATGAGCGTCAGGGG-AAAAAATTGCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTC-GGGGCCAAAAATGGCCAAAAT
**
8475 GCCATAA-GTGTTACATTATGAGCGTC--GG-------T-GCCAAAAT
1 GCCA-AAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* * * * *
8512 GCCATAGGTGTTACATCATTAGCGTCGGGGGCAAAAATTGGCTAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAA-TGGCCAAAAT
* *
8560 GCCAAAGGT-TAAGCAACATGAGCGTCGGGCGCCAAAAATGGCCAAAAT
1 GCCAAAGGTGTTA-CACCATGAGCGTCGGG-GCCAAAAATGGCCAAAAT
* * * * *
8608 GCTAAAGGTGTTAAACAATGAGTGTC-GGG--------GGCCATAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* ** * *
8646 GTCGTAGGTGTTACACCATGAGTGTCGGGGGCCAAAACTGGCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTC-GGGGCCAAAAATGGCCAAAAT
* *
8694 GCCTAAAGGTGTTACACCATAAGCGTC-GGGACAAAAAT-G-----A-
1 GCC-AAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* * * *
8734 --CATAGGTGTTACATCATGAGCGTC-GGG------A--GACGAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* *
8770 GCCATAGGTGTTACATCATGAGCGTC-GGG--------GGCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* ** *
8808 GCCATAGGTGTTACATAATGAGCGTCGGGG-GAAAAATGGCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* *
8854 GCCAAATGTGTTACACCATGAGTGTCGGGGCC-AAAAT-GCC---AT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
** *
8896 ----AA-GTGTTACATTATGAGCGTCGGGGGC---AA-----AAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* *
8930 TCCATAGGTGTTACACCATGAGCGTCGGGTGCC-AAAA-GGCC---AT
1 GCCAAAGGTGTTACACCATGAGCGTCGGG-GCCAAAAATGGCCAAAAT
*
8973 -----AGGTGTTACATCATGAGCGTC-GGG--------GGCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* * ** * * *
9006 GCCATAGTTGTTACATAATGAGCGTCAGGGG-AAAAAATGGTCAAAAC
1 GCCAAAGGTGTTACACCATGAGCGTC-GGGGCCAAAAATGGCCAAAAT
* *
9053 GCCAAATGTGTTACAACATGAGCGTCGGGGCC-AAAAT-GCC---AT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
** *
9095 ----AA-GTGTTACATTATGAGCGTCGGGGGC---AA-----AAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* *
9129 TCCATAGGTGTTACACCATGAGCGTCGGGTGCC-AAAA-GGCC---AT
1 GCCAAAGGTGTTACACCATGAGCGTCGGG-GCCAAAAATGGCCAAAAT
* * * *
9172 -----AGGTGTTACATCATTAGCGTCGGGGGCAAAAATTGGCTAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAA-TGGCCAAAAT
* * * * *
9215 GCAAAAGGT-TAAGCAGCATGGGCGTCGGGGGCCAAAAAAGGCCAAAAT
1 GCCAAAGGTGTTA-CACCATGAGCGTC-GGGGCCAAAAATGGCCAAAAT
* * * * * * *
9263 TCTAAAGTTGTTAAAACATGAGTGTC-GGG--------GGCCATAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* ** * * * * *
9301 GTCGTAGGTGTTACACCATGAGTGTCGGGGGCAATACTGGCCAAAAG
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* *
9348 GCTAAAGGTGTTACACCATGAGCGTC-GGG-------T-GCTAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
** ** * * *
9386 GCCGTAGGTGTTACATAATGAGCGTCGGGGGCAAAAAATGGCTACAAT
1 GCCAAAGGTGTTACACCATGAGCGTC-GGGGCCAAAAATGGCCAAAAT
*
9434 GCCAAAGGTGTTACACCATAAGCGTCGGGG-CAAAAAT-G-----A-
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* * * * **
9473 --CATAGGTGTTACATCATGAGCATCGGGGGCCAAAACTTTCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTC-GGGGCCAAAAATGGCCAAAAT
* *
9519 GCTAAAGGTGTTACACCATGAACGTC---G-----AA--GCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* * ** *
9556 GGCATAGGTGTTACAAAATGAGCGTCGGGAG-CAAAAATAGCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGG-GCCAAAAATGGCCAAAAT
* * **
9603 GCCAAGGGTGTAACATTATGAGCGTC-GGG-------T-GCCAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
* * ** * * *
9641 GCCATAGTTGTTACATTATTAGCGTCGGTGGCAAAAAATGGCTAAAAT
1 GCCAAAGGTGTTACACCATGAGCGTCGG-GGCCAAAAATGGCCAAAAT
* * *
9689 GCCAATGGT-TAACTAGCATGAGCGTCGGGGGCCAAAAACTTGGCCAAAAAT
1 GCCAAAGGTGTTAC-ACCATGAGCGTC-GGGGCCAAAAA--TGGCC-AAAAT
* * *
9740 GCTAAAGGTGTTAAACCATGAGCGTCGGTGCCAA
1 GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAA
Statistics
Matches: 1411, Mismatches: 248, Indels: 424
0.68 0.12 0.20
Matches are distributed among these distances:
30 5 0.00
31 1 0.00
33 2 0.00
34 4 0.00
35 5 0.00
36 2 0.00
37 146 0.10
38 387 0.27
39 62 0.04
40 27 0.02
41 4 0.00
42 7 0.00
43 6 0.00
44 3 0.00
45 12 0.01
46 73 0.05
47 150 0.11
48 414 0.29
49 65 0.05
50 11 0.01
51 23 0.02
52 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (47 bp):
GCCAAAGGTGTTACACCATGAGCGTCGGGGCCAAAAATGGCCAAAAT
Found at i:8070 original size:134 final size:132
Alignment explanation
Indices: 7823--9767 Score: 1038
Period size: 134 Copynumber: 15.2 Consensus size: 132
7813 CATTCCATAC
* * * ** *
7823 GTGTTACACCATGAGCGTCGGGTGCCAAACGGCCATAGGTGTTACATCATTAGCGTCGGGGG-CA
1 GTGTTAAACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCA
*
7887 AAAATTGGCTAAAATGCCAAAGGTTAAGCAACATGAGCGTCGGGCGCCAAAAATGGCCAAAATGC
66 AAAA-TGGCTAAAATGCCAAAGGTTAA-CACCATGAGCGTCGGG-GCCAAAAATGGCCAAAATGC
7952 TAAAG
128 TAAAG
* * * * * *
7957 GTGTTAAACAATGAGTGTCGGGGGCCATAATGTCGTAGGTGTTACACCATGAGTGTCGGGGGCCA
1 GTGTTAAACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCA
* * * * **
8022 AAACTGGCCAAAAT-CCTAAAGGTGTTACACCATGAGCGTCTGGGGCCAAAACTGGTTAAAATGC
66 AAAATGGCTAAAATGCC-AAAGGT-TAACACCATGAGCGTC-GGGGCCAAAAATGGCCAAAATGC
8086 TAAAG
128 TAAAG
* * *
8091 GTGTTACATC-ATGAGCGTCGGGTGCCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGG-C
1 GTGTTA-AACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCC
* *
8154 AAAGAATGGCTAAAATGCCAAAGGTTAACCAGCATGAGCGTCGGGGGCCAAAACTGGCCAAAATG
65 AAA-AATGGCTAAAATGCCAAAGGTTAA-CACCATGAGCGTC-GGGGCCAAAAATGGCCAAAATG
8219 CTAAAG
127 CTAAAG
* * ** * * * *
8225 GTGTTACACCATGAGCGTCGGAAGCTAAAATGCCGTAGATGTTACATCATGAGCGTCGGGGGCAA
1 GTGTTAAACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCA
* * *
8290 AAAATGGCTAAAATGCCAAAGGTTAACTACCATGAGCGTCGGGGGCCAAAAATGACCAAAACGCC
66 AAAATGGCTAAAATGCCAAAGGTTAAC-ACCATGAGCGTC-GGGGCCAAAAATGGCCAAAATGCT
8355 AAAG
129 AAAG
* ** * * * * * *
8359 GAGTTACTCCATGAGTGTCGGGAGACGAAATGCCATAGGTGGTACATCATGAGCGTCGGGGG-C-
1 GTGTTAAACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCA
* * ** * * *
8422 -------C-AAAATGCCATAGGTGTTACATAATGAGCGTCAGGGG-AAAAAATTGCCAAAATGCC
66 AAAATGGCTAAAATGCCAAAGGT-TAACACCATGAGCGTC-GGGGCCAAAAATGGCCAAAATGCT
8478 ATAA-
129 A-AAG
* ** * *
8482 GTGTTACATTATGAGCGTC-GGTGCCAAAATGCCATAGGTGTTACATCATTAGCGTCGGGGG-CA
1 GTGTTAAACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCA
*
8545 AAAATTGGCTAAAATGCCAAAGGTTAAGCAACATGAGCGTCGGGCGCCAAAAATGGCCAAAATGC
66 AAAA-TGGCTAAAATGCCAAAGGTTAA-CACCATGAGCGTCGGG-GCCAAAAATGGCCAAAATGC
8610 TAAAG
128 TAAAG
* * * * * *
8615 GTGTTAAACAATGAGTGTCGGGGGCCATAATGTCGTAGGTGTTACACCATGAGTGTCGGGGGCCA
1 GTGTTAAACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCA
* * * * *
8680 AAACTGGCCAAAATGCCTAAAGGTGTTACACCATAAGCGTC-GGGACAAAAAT-G-----A--C-
66 AAAATGGCTAAAATGCC-AAAGGT-TAACACCATGAGCGTCGGGGCCAAAAATGGCCAAAATGCT
*
8735 ATAG
129 AAAG
* * * *
8739 GTGTTACATC-ATGAGCGTCGGGAGACGAAATGCCATAGGTGTTACATCATGAGCGTCGGGGG-C
1 GTGTTA-AACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCC
* * ** * *
8802 --------C-AAAATGCCATAGGTGTTACATAATGAGCGTCGGGG-GAAAAATGGCCAAAATGCC
65 AAAAATGGCTAAAATGCCAAAGGT-TAACACCATGAGCGTCGGGGCCAAAAATGGCCAAAATGCT
*
8857 AAAT
129 AAAG
* * * * *
8861 GTGTTACACCATGAGTGTC-GGGGCCAAAATGCCATAAGTGTTACATTATGAGCGTCGGGGG-C-
1 GTGTTAAACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCA
* * *
8923 --AA-----AAAATTCCATAGGTGTTACACCATGAGCGTCGGGTGCC-AAAA-GGCC---A---T
66 AAAATGGCTAAAATGCCAAAGGT-TAACACCATGAGCGTCGGG-GCCAAAAATGGCCAAAATGCT
8973 --AG
129 AAAG
* * * * *
8975 GTGTTACATC-ATGAGCGTCGGGGGCCAAAATGCCATAGTTGTTACATAATGAGCGTCAGGGG-A
1 GTGTTA-AACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCC
* *
9038 AAAAATGG-TCAAAACGCCAAATGTGTT-ACAACATGAGCGTCGGGGCC-AAAAT-GCC---A--
65 AAAAATGGCT-AAAATGCCAAA-G-GTTAACACCATGAGCGTCGGGGCCAAAAATGGCCAAAATG
9094 -T-AA-
127 CTAAAG
* ** * * * *
9097 GTGTTACATTATGAGCGTCGGGGGCAAAAAATTCCATAGGTGTTACACCATGAGCGTCGGGTGCC
1 GTGTTAAACAATGAGCGTCGGGGGC-CAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCC
* * * * * *
9162 -AAAA--G-------GCCATAGGTGTTACATCATTAGCGTCGGGGGCAAAAATTGGCTAAAATGC
65 AAAAATGGCTAAAATGCCAAAGGT-TAACACCATGAGCGTCGGGGCCAAAAA-TGGCCAAAATGC
*
9217 -AAAA
128 TAAAG
* * * * * *
9221 G-GTTAAGCAGCATGGGCGTCGGGGGCCAAAAAAGGCCAAAATTCTAAAGTTGTTAAAACATGAG
1 GTGTTAAACA--ATGAGCGTCGGGGGCC--AAAATGCC---A---T--AGGTGTTACATCATGAG
* * * * * * *
9285 TGTCGGGGGCC-ATAATGTCGT---A-G-----GTGTT-ACACCATGAGTGTCGGGGGCAATACT
54 CGTCGGGGGCCAAAAATGGC-TAAAATGCCAAAG-GTTAACACCATGAGCGTCGGGGCCAAAAAT
*
9339 GGCCAAAAGGCTAAAG
117 GGCCAAAATGCTAAAG
* * * * * * *
9355 GTGTTACACCATGAGCGTCGGGTGCTAAAATGCCGTAGGTGTTACATAATGAGCGTCGGGGGCAA
1 GTGTTAAACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCA
* * *
9420 AAAATGGCTACAATGCCAAAGGTGTTACACCATAAGCGTCGGGG-CAAAAAT-G-----A--C-A
66 AAAATGGCTAAAATGCCAAAGGT-TAACACCATGAGCGTCGGGGCCAAAAATGGCCAAAATGCTA
*
9475 TAG
130 AAG
* * * * *
9478 GTGTTACATC-ATGAGCATCGGGGGCCAAAACTTTCCAAAATGCTAAAGGTGTTACACCATGAAC
1 GTGTTA-AACAATGAGCGTCGGGGGCCAAAA--TGCC---A---T--AGGTGTTACATCATGAGC
** * ** *
9542 GTC-GAAGCC-AAAATGGC----AT-----AGGTGTTACAAAATGAGCGTCGGGAG-CAAAAATA
55 GTCGGGGGCCAAAAATGGCTAAAATGCCAAAGGT-TAACACCATGAGCGTCGGG-GCCAAAAATG
* *
9595 GCCAAAATGCCAAGG
118 GCCAAAATGCTAAAG
* * * * *
9610 GTG-T-AACATTATGAGCGTCGGGTGCCAAAATGCCATAGTTGTTACATTATTAGCGTCGGTGGC
1 GTGTTAAACA--ATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGC
* * *
9673 AAAAAATGGCTAAAATGCCAATGGTTAACTAGCATGAGCGTCGGGGGCCAAAAACTTGGCCAAAA
64 CAAAAATGGCTAAAATGCCAAAGGTTAAC-ACCATGAGCGTC-GGGGCCAAAAA--TGGCC-AAA
9738 ATGCTAAAG
124 ATGCTAAAG
*
9747 GTGTTAAACCATGAGCGTCGG
1 GTGTTAAACAATGAGCGTCGG
9768 TGCCAA
Statistics
Matches: 1413, Mismatches: 245, Indels: 303
0.72 0.12 0.15
Matches are distributed among these distances:
112 2 0.00
113 27 0.02
114 49 0.03
115 44 0.03
116 1 0.00
117 2 0.00
118 2 0.00
119 2 0.00
120 1 0.00
121 41 0.03
122 159 0.11
123 161 0.11
124 102 0.07
125 27 0.02
126 8 0.01
127 5 0.00
128 2 0.00
129 4 0.00
130 3 0.00
131 27 0.02
132 65 0.05
133 121 0.09
134 475 0.34
135 46 0.03
136 8 0.01
137 24 0.02
138 1 0.00
139 3 0.00
140 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (132 bp):
GTGTTAAACAATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCA
AAAATGGCTAAAATGCCAAAGGTTAACACCATGAGCGTCGGGGCCAAAAATGGCCAAAATGCTAA
AG
Found at i:8507 original size:37 final size:37
Alignment explanation
Indices: 8466--8539 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
8456 GGGAAAAAAT
*
8466 TGCCAAAATGCCATAAGTGTTACATTATGAGCGTCGG
1 TGCCAAAATGCCATAAGTGTTACATCATGAGCGTCGG
* *
8503 TGCCAAAATGCCATAGGTGTTACATCATTAGCGTCGG
1 TGCCAAAATGCCATAAGTGTTACATCATGAGCGTCGG
8540 GGGCAAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (37 bp):
TGCCAAAATGCCATAAGTGTTACATCATGAGCGTCGG
Found at i:8890 original size:46 final size:46
Alignment explanation
Indices: 8799--8891 Score: 123
Period size: 46 Copynumber: 2.0 Consensus size: 46
8789 GAGCGTCGGG
* * *
8799 GGCCAAAATGCCATAGGTGTTACATAATGAGCGTCGGGGGAAAAAT
1 GGCCAAAATGCCAAAGGTGTTACACAATGAGCGTCGGGGCAAAAAT
* * * *
8845 GGCCAAAATGCCAAATGTGTTACACCATGAGTGTCGGGGCCAAAAT
1 GGCCAAAATGCCAAAGGTGTTACACAATGAGCGTCGGGGCAAAAAT
8891 G
1 G
8892 CCATAAGTGT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.19
Consensus pattern (46 bp):
GGCCAAAATGCCAAAGGTGTTACACAATGAGCGTCGGGGCAAAAAT
Found at i:8966 original size:160 final size:161
Alignment explanation
Indices: 8603--9691 Score: 566
Period size: 170 Copynumber: 6.6 Consensus size: 161
8593 AAAAATGGCC
* * * * * * * * *
8603 AAAATGCTAAAGGTGTTAAACAATGAGTGTCGGGGGCCATAATGTCGTAGGTGTTACACCATGAG
1 AAAATGCCATAGGTGTTACACCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAG
* *
8668 TGTCGGGGGCCAAAACTGGCCAAAATGCCTAAAGGTGTTACACCATAAGCGTCGGGACAAAAATG
66 CGTCGGGGG-CAAAAATGGCCAAAATGCCTAAAGGTGTTACACCATAAGCGTCGGGACAAAAATG
* *
8733 ACATAGGTGTTACATCATGAGCGTCGGGAGAC
130 ACATAAGTGTTACATCATGAGCGTCGGGAGAA
* * *
8765 GAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATAATGAG
1 AAAATGCCATAGGTGTTACACCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAG
* * * * * *
8830 CGTCGGGGG-AAAAATGGCCAAAATGCC-AAATGTGTTACACCATGAGTGTCGGGGCCAAAATGC
66 CGTCGGGGGCAAAAATGGCCAAAATGCCTAAAGGTGTTACACCATAAGCGTCGGGACAAAAATGA
* *
8893 CATAAGTGTTACATTATGAGCGTCGGGGGCAA
131 CATAAGTGTTACATCATGAGCGTCGGGAG-AA
* * *
8925 AAAATTCCATAGGTGTTACACCATGAGCGTCGGGTGCCAAAAGGCCATAGGTGTTACATCATGAG
1 AAAATGCCATAGGTGTTACACCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAG
* * ** *
8990 CGTC--GGG-------GGCCAAAATGCC-ATAGTTGTTACATAATGAGCGTCAGGGGA-AAAAAT
66 CGTCGGGGGCAAAAATGGCCAAAATGCCTAAAGGTGTTACACCATAAGCGTC--GGGACAAAAAT
* **
9044 GGTCAAAACGCCA-AATGTGTTACAACATGAGCGTCGGG-GCC
129 -G-----A---CATAA-GTGTTACATCATGAGCGTCGGGAGAA
* ** * * *
9085 AAAATGCCATAAGTGTTACATTATGAGCGTCGGGGGCAAAAAATTCCATAGGTGTTACACCATGA
1 AAAATGCCATAGGTGTTACACCATGAGCGTCGGGGGC-CAAAATGCCATAGGTGTTACATCATGA
* * * * *
9150 GCGTC--GGG------T-GCCAAAAGGCC-ATAGGTGTTACATCATTAGCGTCGGGGGCAAAAAT
65 GCGTCGGGGGCAAAAATGGCCAAAATGCCTAAAGGTGTTACACCATAAGCGTC-GGGACAAAAA-
* * * *
9205 TGGCTAAAATGCAAAAG-GTTAAGCAGCATGGGCGTCGGGGGCCAA
128 T-G-----A--CATAAGTGTT-A-CATCATGAGCGTCGGGAG--AA
* * * * * * * *
9250 AAAAGGCCAAAATTCTAAAGTTGTTAAAACATGAGTGTCGGGGGCCATAATGTCGTAGGTGTTAC
1 AAAATGCC---A---T--AGGTGTTACACCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTAC
* * * * * * *
9315 ACCATGAGTGTCGGGGGCAATACTGGCCAAAA-GGCTAAAGGTGTTACACCATGAGCGTCGGGTG
58 ATCATGAGCGTCGGGGGCAAAAATGGCCAAAATGCCTAAAGGTGTTACACCATAAGCGTCGGG-A
* * * * * *
9379 CTAAAATGCCGTAGGTGTTACATAATGAGCGTCGGGGGCAA
122 CAAAAATGACATAAGTGTTACATCATGAGCGTCGGGAG-AA
* * *
9420 AAAATGGCTACAATGCCAAAGGTGTTACACCATAAGCGTC-GGGGCAAAAATGACATAGGTGTTA
1 AAAAT-GC--C-AT-----AGGTGTTACACCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTA
* * **
9484 CATCATGAGCATCGGGGGCCAAAACTTTCCAAAATG-CTAAAGGTGTTACACCATGAA-CGTC-G
57 CATCATGAGCGTCGGGGG-CAAAAATGGCCAAAATGCCTAAAGGTGTTACACCAT-AAGCGTCGG
* * * * ** *
9546 AAGCCAAAATGGCATAGGTGTTACAAAATGAGCGTCGGGAGCA
120 GA-CAAAAATGACATAAGTGTTACATCATGAGCGTCGGGAGAA
* ** * *
9589 AAAATAGCCAAAATGCCAAGGGTGTAACATTATGAGCGTCGGGTGCCAAAATGCCATAGTTGTTA
1 AAAAT-GCC---AT----A-GGTGTTACACCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTA
* * * *
9654 CATTATTAGCGTCGGTGGCAAAAAATGGCTAAAATGCC
57 CATCATGAGCGTCGGGGGC-AAAAATGGCCAAAATGCC
9692 AATGGTTAAC
Statistics
Matches: 734, Mismatches: 134, Indels: 109
0.75 0.14 0.11
Matches are distributed among these distances:
152 29 0.04
153 5 0.01
154 4 0.01
158 3 0.00
159 56 0.08
160 120 0.16
161 73 0.10
162 106 0.14
163 1 0.00
165 7 0.01
167 1 0.00
168 5 0.01
169 28 0.04
170 122 0.17
171 73 0.10
172 32 0.04
173 25 0.03
174 3 0.00
179 1 0.00
180 7 0.01
181 33 0.04
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.21
Consensus pattern (161 bp):
AAAATGCCATAGGTGTTACACCATGAGCGTCGGGGGCCAAAATGCCATAGGTGTTACATCATGAG
CGTCGGGGGCAAAAATGGCCAAAATGCCTAAAGGTGTTACACCATAAGCGTCGGGACAAAAATGA
CATAAGTGTTACATCATGAGCGTCGGGAGAA
Found at i:9142 original size:199 final size:198
Alignment explanation
Indices: 8685--9204 Score: 821
Period size: 199 Copynumber: 2.6 Consensus size: 198
8675 GGCCAAAACT
** * * **
8685 GGCCAAAATGCC-TAAAGGTGTTACACCATAAGCGTC-GGGAC-AAAAATGACATAGGTGTTACA
1 GGCCAAAATGCCAT-AA-GTGTTACATTATGAGCGTCGGGGGCAAAAAATTCCATAGGTGTTACA
* * * * *
8747 TCATGAGCGTCGGGAGACGAAATGCCATAGGTGTTACATCATGAGCGTCGGGGGCCAAAATGCCA
64 CCATGAGCGTCGGGTGCCAAAAGGCCATAGGTGTTACATCATGAGCGTCGGGGGCCAAAATGCCA
* * * *
8812 TAGGTGTTACATAATGAGCGTCGGGGGAAAAATGGCCAAAATGCCAAATGTGTTACACCATGAGT
129 TAGGTGTTACATAATGAGCGTCGGGGAAAAAATGGCCAAAACGCCAAATGTGTTACAACATGAGC
8877 GTCGG
194 GTCGG
8882 GGCCAAAATGCCATAAGTGTTACATTATGAGCGTCGGGGGCAAAAAATTCCATAGGTGTTACACC
1 GGCCAAAATGCCATAAGTGTTACATTATGAGCGTCGGGGGCAAAAAATTCCATAGGTGTTACACC
8947 ATGAGCGTCGGGTGCCAAAAGGCCATAGGTGTTACATCATGAGCGTCGGGGGCCAAAATGCCATA
66 ATGAGCGTCGGGTGCCAAAAGGCCATAGGTGTTACATCATGAGCGTCGGGGGCCAAAATGCCATA
* *
9012 GTTGTTACATAATGAGCGTCAGGGGAAAAAATGGTCAAAACGCCAAATGTGTTACAACATGAGCG
131 GGTGTTACATAATGAGCGTC-GGGGAAAAAATGGCCAAAACGCCAAATGTGTTACAACATGAGCG
9077 TCGG
195 TCGG
9081 GGCCAAAATGCCATAAGTGTTACATTATGAGCGTCGGGGGCAAAAAATTCCATAGGTGTTACACC
1 GGCCAAAATGCCATAAGTGTTACATTATGAGCGTCGGGGGCAAAAAATTCCATAGGTGTTACACC
* *
9146 ATGAGCGTCGGGTGCCAAAAGGCCATAGGTGTTACATCATTAGCGTCGGGGGCAAAAAT
66 ATGAGCGTCGGGTGCCAAAAGGCCATAGGTGTTACATCATGAGCGTCGGGGGCCAAAAT
9205 TGGCTAAAAT
Statistics
Matches: 300, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
196 16 0.05
197 18 0.06
198 101 0.34
199 165 0.55
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (198 bp):
GGCCAAAATGCCATAAGTGTTACATTATGAGCGTCGGGGGCAAAAAATTCCATAGGTGTTACACC
ATGAGCGTCGGGTGCCAAAAGGCCATAGGTGTTACATCATGAGCGTCGGGGGCCAAAATGCCATA
GGTGTTACATAATGAGCGTCGGGGAAAAAATGGCCAAAACGCCAAATGTGTTACAACATGAGCGT
CGG
Found at i:9397 original size:85 final size:85
Alignment explanation
Indices: 9236--9725 Score: 455
Period size: 85 Copynumber: 5.7 Consensus size: 85
9226 AGCAGCATGG
* * * * * * * *
9236 GCGTCGGGGGCCAAAAAAGGCCAAAATTCTAAAGTTGTTAAAACATGAGTGTCGGGGGCCATAAT
1 GCGTCGGGGG-CAAAAATGGCCAAAATGCTAAAGGTGTTACACCATGAGCGTCGGGTGCCAAAAT
* * **
9301 GTCGTAGGTGTTACACCATGA
65 GCCATAGGTGTTACATAATGA
* * * * *
9322 GTGTCGGGGGCAATACTGGCCAAAAGGCTAAAGGTGTTACACCATGAGCGTCGGGTGCTAAAATG
1 GCGTCGGGGGCAAAAATGGCCAAAATGCTAAAGGTGTTACACCATGAGCGTCGGGTGCCAAAATG
*
9387 CCGTAGGTGTTACATAATGA
66 CCATAGGTGTTACATAATGA
* * * * *
9407 GCGTCGGGGGCAAAAAATGGCTACAATGCCAAAGGTGTTACACCATAAGCGTCGGG-GCAAAAAT
1 GCGTCGGGGGC-AAAAATGGCCAAAATGCTAAAGGTGTTACACCATGAGCGTCGGGTGCCAAAAT
* *
9471 GACATAGGTGTTACATCATGA
65 GCCATAGGTGTTACATAATGA
* * ** * **
9492 GCATCGGGGGCCAAAACTTTCCAAAATGCTAAAGGTGTTACACCATGAACGTC-GAAGCCAAAAT
1 GCGTCGGGGG-CAAAAATGGCCAAAATGCTAAAGGTGTTACACCATGAGCGTCGGGTGCCAAAAT
* *
9556 GGCATAGGTGTTACAAAATGA
65 GCCATAGGTGTTACATAATGA
* * * * * **
9577 GCGTCGGGAGCAAAAATAGCCAAAATGCCAAGGGTGTAACATTATGAGCGTCGGGTGCCAAAATG
1 GCGTCGGGGGCAAAAATGGCCAAAATGCTAAAGGTGTTACACCATGAGCGTCGGGTGCCAAAATG
* * *
9642 CCATAGTTGTTACATTATTA
66 CCATAGGTGTTACATAATGA
* * * * * * *
9662 GCGTCGGTGGCAAAAAATGGCTAAAATGCCAATGGT-TAACTAGCATGAGCGTCGGGGGCCAAAA
1 GCGTCGGGGGC-AAAAATGGCCAAAATGCTAAAGGTGTTAC-ACCATGAGCGTCGGGTGCCAAAA
9726 ACTTGGCCAA
Statistics
Matches: 330, Mismatches: 68, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
84 34 0.10
85 208 0.63
86 88 0.27
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (85 bp):
GCGTCGGGGGCAAAAATGGCCAAAATGCTAAAGGTGTTACACCATGAGCGTCGGGTGCCAAAATG
CCATAGGTGTTACATAATGA
Found at i:9599 original size:47 final size:47
Alignment explanation
Indices: 9547--9644 Score: 119
Period size: 47 Copynumber: 2.1 Consensus size: 47
9537 TGAACGTCGA
* *
9547 AGCCAAAATGGCATA-GGTGTTACAAAATGAGCGTCGGGAGCAAAAAT
1 AGCCAAAATGCCA-AGGGTGTAACAAAATGAGCGTCGGGAGCAAAAAT
** * *
9594 AGCCAAAATGCCAAGGGTGTAACATTATGAGCGTCGGGTGCCAAAAT
1 AGCCAAAATGCCAAGGGTGTAACAAAATGAGCGTCGGGAGCAAAAAT
9641 -GCCA
1 AGCCA
9645 TAGTTGTTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
46 5 0.11
47 39 0.89
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.17
Consensus pattern (47 bp):
AGCCAAAATGCCAAGGGTGTAACAAAATGAGCGTCGGGAGCAAAAAT
Found at i:9657 original size:38 final size:37
Alignment explanation
Indices: 9595--9676 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 37
9585 AGCAAAAATA
9595 GCCAAAATGCCAAGGGTGTAACATTATGAGCGTCGGGT
1 GCCAAAATGCCAAGGGTGTAACATTATGAGCGTC-GGT
* * *
9633 GCCAAAATGCCATA-GTTGTTACATTATTAGCGTCGGT
1 GCCAAAATGCCA-AGGGTGTAACATTATGAGCGTCGGT
*
9670 GGCAAAA
1 GCCAAAA
9677 AATGGCTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
37 9 0.23
38 29 0.74
39 1 0.03
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (37 bp):
GCCAAAATGCCAAGGGTGTAACATTATGAGCGTCGGT
Done.