Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018365.1 Corchorus olitorius cultivar O-4 contig18398, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13098
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Found at i:6930 original size:1 final size:1
Alignment explanation
Indices: 6924--6960 Score: 65
Period size: 1 Copynumber: 37.0 Consensus size: 1
6914 TTTTGTTTGG
*
6924 TTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
6961 GCGGTTTAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97
Consensus pattern (1 bp):
T
Found at i:6931 original size:14 final size:14
Alignment explanation
Indices: 6914--6960 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
6904 TTTTGTTTGG
*
6914 TTTTGTTTGGTTTT
1 TTTTTTTTGGTTTT
*
6928 TTTTTTTTTGTTTT
1 TTTTTTTTGGTTTT
6942 TTTTTTTT--TTTT
1 TTTTTTTTGGTTTT
6954 TTTTTTT
1 TTTTTTT
6961 GCGGTTTAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
12 11 0.35
14 20 0.65
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (14 bp):
TTTTTTTTGGTTTT
Found at i:6938 original size:19 final size:17
Alignment explanation
Indices: 6899--6960 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 17
6889 TCTTGATTTC
* **
6899 TTGTTTTTTGTTTGGTT
1 TTGTTTTTTTTTTTTTT
6916 TTGTTTGGTTTTTTTTTTT
1 TTGTTT--TTTTTTTTTTT
6935 TTGTTTTTTTTTTTTTT
1 TTGTTTTTTTTTTTTTT
6952 TT-TTTTTTT
1 TTGTTTTTTT
6961 GCGGTTTAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
16 7 0.17
17 19 0.47
19 14 0.35
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (17 bp):
TTGTTTTTTTTTTTTTT
Found at i:6940 original size:24 final size:24
Alignment explanation
Indices: 6902--6961 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
6892 TGATTTCTTG
* *
6902 TTTTTTGTTTGGTTTTGTTTGGTT
1 TTTTTTTTTTTGTTTTGTTTGGTT
* **
6926 TTTTTTTTTTTGTTTTTTTTTTTT
1 TTTTTTTTTTTGTTTTGTTTGGTT
6950 TTTTTTTTTTTG
1 TTTTTTTTTTTG
6962 CGGTTTAGGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (24 bp):
TTTTTTTTTTTGTTTTGTTTGGTT
Found at i:9863 original size:31 final size:31
Alignment explanation
Indices: 9804--9942 Score: 167
Period size: 31 Copynumber: 4.5 Consensus size: 31
9794 CCAAACTGTG
* *
9804 CACGAGGCATGCCACGTGTCA-TTTTTGGTA
1 CACGTGGCGTGCCACGTGTCACTTTTTGGTA
*
9834 CATGTGGCGTGCCACGTGTCACTTTTTGGTA
1 CACGTGGCGTGCCACGTGTCACTTTTTGGTA
* *
9865 CATGTGGCGTGCCACGTGTC-GTTTTTAGGTA
1 CACGTGGCGTGCCACGTGTCACTTTTT-GGTA
* **
9896 CACGTGGC-TGCCACATGTTGCTTTTTGGTA
1 CACGTGGCGTGCCACGTGTCACTTTTTGGTA
*
9926 CACGTGGCATGCCACGT
1 CACGTGGCGTGCCACGT
9943 CGGATACCGT
Statistics
Matches: 96, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
30 44 0.46
31 52 0.54
ACGTcount: A:0.15, C:0.24, G:0.29, T:0.32
Consensus pattern (31 bp):
CACGTGGCGTGCCACGTGTCACTTTTTGGTA
Found at i:9884 original size:61 final size:61
Alignment explanation
Indices: 9804--9942 Score: 190
Period size: 61 Copynumber: 2.3 Consensus size: 61
9794 CCAAACTGTG
* * *
9804 CACGAGGCATGCCACGTGTCATTTTT-GGTACATGTGGCGTGCCACGTGTCACTTTTTGGTA
1 CACGTGGCATGCCACGTGTCATTTTTAGGTACACGTGGC-TGCCACATGTCACTTTTTGGTA
* * * **
9865 CATGTGGCGTGCCACGTGTCGTTTTTAGGTACACGTGGCTGCCACATGTTGCTTTTTGGTA
1 CACGTGGCATGCCACGTGTCATTTTTAGGTACACGTGGCTGCCACATGTCACTTTTTGGTA
9926 CACGTGGCATGCCACGT
1 CACGTGGCATGCCACGT
9943 CGGATACCGT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
61 56 0.84
62 11 0.16
ACGTcount: A:0.15, C:0.24, G:0.29, T:0.32
Consensus pattern (61 bp):
CACGTGGCATGCCACGTGTCATTTTTAGGTACACGTGGCTGCCACATGTCACTTTTTGGTA
Found at i:10930 original size:333 final size:332
Alignment explanation
Indices: 10319--11057 Score: 1237
Period size: 333 Copynumber: 2.2 Consensus size: 332
10309 GCTTGTTTTA
10319 ATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCTTGAAAAGTCCTCGA
1 ATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATT-AAAGCTTGAAAAGTCCTCGA
10384 ATATTTTTGCGTTAAGTTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTT
65 ATATTTTTGCGTTAAGTTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTT
* * * * *
10449 CACGGTCATTTTTTTGTAAAATTTTAGCCAAAATCGTGTACTAACCATTACGGTTTTGGGCTAAA
130 CACGGTCATTTTGTTGCAAAATTTTAGCAAAAATCGTGTACTAACCATCACGGTTTTGGACTAAA
*
10514 AATGCGTTTCGGGGACCCGGCTCAGTTTTGCATGACTTTTGGCATCAAGACTCCTTGAAAGATCT
195 AACGCGTTTCGGGGACCCGGCTCAGTTTTGCATGACTTTTGGCATCAAGACTCCTTGAAAGATCT
* *
10579 ATATTCATCTACTAAAAACTTATCCATGTAGCATTTAAGGATTTGCTTTTACGAGCATTTGAATC
260 ATATTCATCTAATAAAAACTTAGCCATGTAGCATTTAAGGATTTGCTTTTACGAGCATTTGAATC
10644 CTGTTTCG
325 CTGTTTCG
*
10652 ATTTAATTATAAATTAATTCAGAAAAAATATGAAAAACGATATTAAATGCTTGAAAAGTCCTCGA
1 ATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAA-GCTTGAAAAGTCCTCGA
*
10717 ATGTTTTTGGCGTTAAGTTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTT
65 ATATTTTT-GCGTTAAGTTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTT
* ** *
10782 TCGCGGTCA-TTTGTTGCAAAATTTTAGCAAAAATTTTGTACTAACCATCACGGTTTTTGACTAA
129 TCACGGTCATTTTGTTGCAAAATTTTAGCAAAAATCGTGTACTAACCATCACGGTTTTGGACTAA
* * *
10846 AAACGCGTTTCGGGGACCCGGCTCAGTTTTGCATGATTTTTGGCGTCAAGACTCCTTGAAATATC
194 AAACGCGTTTCGGGGACCCGGCTCAGTTTTGCATGACTTTTGGCATCAAGACTCCTTGAAAGATC
* *
10911 TATATTCATCTAATAAAAACTTAGCCATGTAGCATTTGAGGATTTGTTTTTACGAGCATTTGAAT
259 TATATTCATCTAATAAAAACTTAGCCATGTAGCATTTAAGGATTTGCTTTTACGAGCATTTGAAT
*
10976 CTTGTTTCG
324 CCTGTTTCG
* *
10985 ATTTAATTAGAAATTCATTCAGAAAAAATATGAAAAACGATATTTAAAGCTTGAAAAGTTCTCGA
1 ATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATA-TTAAAGCTTGAAAAGTCCTCGA
11050 ATATTTTT
65 ATATTTTT
11058 TTTGCGTTAA
Statistics
Matches: 379, Mismatches: 24, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
332 3 0.01
333 307 0.81
334 69 0.18
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (332 bp):
ATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAGCTTGAAAAGTCCTCGAA
TATTTTTGCGTTAAGTTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTTC
ACGGTCATTTTGTTGCAAAATTTTAGCAAAAATCGTGTACTAACCATCACGGTTTTGGACTAAAA
ACGCGTTTCGGGGACCCGGCTCAGTTTTGCATGACTTTTGGCATCAAGACTCCTTGAAAGATCTA
TATTCATCTAATAAAAACTTAGCCATGTAGCATTTAAGGATTTGCTTTTACGAGCATTTGAATCC
TGTTTCG
Found at i:12384 original size:334 final size:333
Alignment explanation
Indices: 11064--13094 Score: 3084
Period size: 333 Copynumber: 6.0 Consensus size: 333
11054 TTTTTTTGCG
*
11064 TTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAACGCTACATGGCTAAGTTTT
1 TTAAATCGAAACAAGATTAAAATGCTCGTAAAAACAAATCCTTAAACGCTACATGGCTAAGTTTT
11129 TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCGGGT
66 TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCGGGT
* *
11194 CTCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTGCACGATTTTGGCTAAAATTTTGCA
131 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAATTTTGCA
* * *
11259 AAAAATGACCGCGAAAAATTTTTCCTCAATTTTTTGGATAAAATACTCATAAAATATATATAACT
196 AAAAATGACCACGAAAATTTTTTCCTCAA-TTTTTGGATAAAATACTCAGAAAATATATATAACT
*
11324 TAACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTTTAGAAT
260 TAACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTCT-GAAT
* *
11389 AAATTTATAA
324 TAATTTCTAA
*
11399 TTAAATCGAAACAAGATTAAAAGGCTCGTAAAAACAAATCCTTAAACGCTACATGGCTAAGTTTT
1 TTAAATCGAAACAAGATTAAAATGCTCGTAAAAACAAATCCTTAAACGCTACATGGCTAAGTTTT
* * * *
11464 TTTTAAATGAATATAGATATCTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCTGGGT
66 TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCGGGT
** * * **
11529 CCTTGAAACGCGTTTTAAGCCAAAAACAGTGATGGTTAGTACACGATTTTGGCTAAAATTTTATA
131 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAATTTTGCA
* *
11594 AAAAACGACCACGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCAGAAAATATATATAATTT
196 AAAAATGACCACGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCAGAAAATATATATAACTT
*
11659 AA-AGCCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCATTTTATATA-TTTTTCTGAATT
261 AACA-CCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTCTGAATT
*
11722 AATTTCAAA
325 AATTTCTAA
* * * * **
11731 TTAACTCGAAACAAGATTCAAATGCTCGTAAAAAGTAAAAAAAAATCCTCAATTGCTACATGGCT
1 TTAAATCGAAACAAGATTAAAATGCTC-------GTAAAAACAAATCCTTAAACGCTACATGGCT
*
11796 AAGTTTTTATTAGATGAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGCAAAACTGA
59 AAGTTTTTATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGA
*
11861 GTCGGGTCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGAGTACGCGTTTTTAGTACACGATT
124 GCCGGGTCCCCGAAACGCGTTTTTAGCCAAAAACC--G-TGA-T--G-G---TTAGTACACGATT
*
11926 TTGGCTAAAATTTTGCAAAAAATGACCGCGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCA
179 TTGGCTAAAATTTTGCAAAAAATGACCACGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCA
* *
11991 TAAAATATATATAACTAAACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTAT
244 GAAAATATATATAACTTAACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTAT
12056 ATATTTTTTTCTG-ATTAAATTTCTAA
309 ATA-TTTTTTCTGAATT-AATTTCTAA
*
12082 TTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAACGCTACATGGCTAAGTTTT
1 TTAAATCGAAACAAGATTAAAATGCTCGTAAAAACAAATCCTTAAACGCTACATGGCTAAGTTTT
** * * *
12147 TATTATTTGAATATAGATATTTCAAGGAGTCTTGACGCAAAAAATCATGCAAAACTTAGCCGGAT
66 TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCGGGT
* * *
12212 CCCCGAAATGCATTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTTGGCTAAAATTTTGCA
131 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAATTTTGCA
* * * * * *
12277 AAAAGTGACCGCGAAAATTTTTTCGTCAATTTTTGGATAAAATACTCAGAAGATTTATATAATTT
196 AAAAATGACCACGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCAGAAAATATATATAACTT
*
12342 AACGCCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTCTGAATTA
261 AACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTCTGAATTA
12407 ATTT-TAAA
326 ATTTCT-AA
* **
12415 TTAAATCGAAACAAGATTAAAATGCTCGTAAAAACAAATCCTCAATTGCTACATGGCTAAGTTTT
1 TTAAATCGAAACAAGATTAAAATGCTCGTAAAAACAAATCCTTAAACGCTACATGGCTAAGTTTT
* * *
12480 TATTAGATGAATATAGATATTTCAAGGAGTCTTGATGCCAAAAATCAAGCAAAACTGAGTCGGGT
66 TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCGGGT
* * *
12545 CCCCGAAACGCGTTTTTAGCAAAAAATCGTGTTGGTTAGTACACGATTTTGGCTAAAATTTTGCA
131 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAATTTTGCA
* * *
12610 AAAAATGACCACGAAAAATTTTTCCTCAATTTTTGGATAAAATACTCATAAAATATATATAACTA
196 AAAAATGACCACGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCAGAAAATATATATAACTT
12675 AACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTCTG-ATTA
261 AACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTCTGAATT-
12739 AATTTCTAA
325 AATTTCTAA
* * *
12748 TTATATCGAAACAAGATTAAAACGCTCGTAAAAACAAATCCTTAAACGCTAAATGGCTAAGTTTT
1 TTAAATCGAAACAAGATTAAAATGCTCGTAAAAACAAATCCTTAAACGCTACATGGCTAAGTTTT
12813 TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCGGGT
66 TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCGGGT
** * * *
12878 CCTTGAAACGCGGTTTTAACCAAAAACCGTGATGGTTCGTACACGATTTTGGCTAAAATTTTGCA
131 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAATTTTGCA
* * * *
12943 AAAAACGACTACGAAAATTTTTTCCTCAATTTTTGGATAAAATAATCAGAAAATATATATAATTT
196 AAAAATGACCACGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCAGAAAATATATATAACTT
** * *
13008 AAGGCAAAAAATATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATA-TTTTTCTGAATTA
261 AACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTCTGAATTA
*
13072 ATTTCAAA
326 ATTTCTAA
13080 TTAAATCGAAACAAG
1 TTAAATCGAAACAAG
13095 CTTC
Statistics
Matches: 1540, Mismatches: 129, Indels: 57
0.89 0.07 0.03
Matches are distributed among these distances:
332 69 0.04
333 610 0.40
334 224 0.15
335 207 0.13
337 1 0.00
338 1 0.00
339 117 0.08
340 1 0.00
341 4 0.00
342 4 0.00
343 1 0.00
344 117 0.08
345 1 0.00
346 1 0.00
349 136 0.09
350 4 0.00
351 42 0.03
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (333 bp):
TTAAATCGAAACAAGATTAAAATGCTCGTAAAAACAAATCCTTAAACGCTACATGGCTAAGTTTT
TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCGGGT
CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAATTTTGCA
AAAAATGACCACGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCAGAAAATATATATAACTT
AACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTCTGAATTA
ATTTCTAA
Found at i:12390 original size:683 final size:667
Alignment explanation
Indices: 11064--13094 Score: 3309
Period size: 683 Copynumber: 3.0 Consensus size: 667
11054 TTTTTTTGCG
* * **
11064 TTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAACGCTACATGGCTAAGTTTT
1 TTAAATCGAAACAAGATTAAAATGCTCGTAAAAACAAATCCTCAATTGCTACATGGCTAAGTTTT
*
11129 TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCGGGT
66 TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGTCGGGT
* *
11194 CTCCGAAACGCGTTTTTAGCCAAAAACC--GTGATGGTTAGTGCACGATTTTGGCTAAAATTTTG
131 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGTGATGGTTAGTACACGATTTTGGCTAAAATTTTG
11257 CAAAAAATGACCGCGAAAAATTTTTCCTCAATTTTTTGGATAAAATACTCATAAAATATATATAA
196 CAAAAAATGACCGCGAAAAATTTTTCCTCAA-TTTTTGGATAAAATACTCATAAAATATATATAA
*
11322 CTTAACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTT-TAG
260 CTAAACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTTCT-G
* * *
11386 AATAAATTTATAATTAAATCGAAACAAGATTAAAAGGCTCGTAAAAACAAATCCTTAAACGCTAC
324 ATTAAATTTCTAATTAAATCGAAACAAGATTAAAACGCTCGTAAAAACAAATCCTTAAACGCTAC
* *
11451 ATGGCTAAGTTTTTTTTAAATGAATATAGATATCTCAAGGAGTCTTGACGCCAAAAATCATGCAA
389 ATGGCTAAGTTTTTATTAAATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAA
* *
11516 AACTGAGCTGGGTCCTTGAAACGCGTTTTAAGCCAAAAACAGTGATGGTTAGTACACGATTTTGG
454 AACTGAGCCGGGTCCTTGAAACGCGTTTTTAGCCAAAAAC-GTGATGGTTAGTACACGATTTTGG
**
11581 CTAAAATTTTATAAAAAACGACCACGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCAGAAA
518 CTAAAATTTTGCAAAAAACGACCACGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCAGAAA
*
11646 ATATATATAATTTAAAGCCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCATTTTATATAT
583 ATATATATAATTTAAAGCCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATAT
11711 TTTTCTGAATTAATTTCAAA
648 TTTTCTGAATTAATTTCAAA
* * *
11731 TTAACTCGAAACAAGATTCAAATGCTCGTAAAAAGTAAAAAAAAATCCTCAATTGCTACATGGCT
1 TTAAATCGAAACAAGATTAAAATGCTC-------GTAAAAACAAATCCTCAATTGCTACATGGCT
*
11796 AAGTTTTTATTAGATGAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGCAAAACTGA
59 AAGTTTTTATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGA
11861 GTCGGGTCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGAGTACGCGTTTTTAGTACACGATT
124 GTCGGGTCCCCGAAACGCGTTTTTAGCCAAAAACCGTG-TGA-T--G-G---TTAGTACACGATT
*
11926 TTGGCTAAAATTTTGCAAAAAATGACCGCGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCA
181 TTGGCTAAAATTTTGCAAAAAATGACCGCGAAAAATTTTTCCTCAATTTTTGGATAAAATACTCA
11991 TAAAATATATATAACTAAACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTAT
246 TAAAATATATATAACTAAACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTAT
* *
12056 ATATTTTTTTCTGATTAAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAAT
311 ATATTTTTTTCTGATTAAATTTCTAATTAAATCGAAACAAGATTAAAACGCTCGTAAAAACAAAT
** *
12121 CCTTAAACGCTACATGGCTAAGTTTTTATTATTTGAATATAGATATTTCAAGGAGTCTTGACGCA
376 CCTTAAACGCTACATGGCTAAGTTTTTATTAAATGAATATAGATATTTCAAGGAGTCTTGACGCC
* * ** * *
12186 AAAAATCATGCAAAACTTAGCCGGATCCCCGAAATGCATTTTTAGCCAAAAATCGTGATGGTTAG
441 AAAAATCATGCAAAACTGAGCCGGGTCCTTGAAACGCGTTTTTAGCCAAAAA-CGTGATGGTTAG
** * *
12251 TACACGATTTTGGCTAAAATTTTGCAAAAAGTGACCGCGAAAATTTTTTCGTCAATTTTTGGATA
505 TACACGATTTTGGCTAAAATTTTGCAAAAAACGACCACGAAAATTTTTTCCTCAATTTTTGGATA
* * *
12316 AAATACTCAGAAGATTTATATAATTTAACGCCAAAAAGATTCGAGGACTTTTAACGCTTTTAATA
570 AAATACTCAGAAAATATATATAATTTAAAGCCAAAAAGATTCGAGGACTTTTAACGCTTTTAATA
*
12381 TCGTTTTATATATTTTTTCTGAATTAATTTTAAA
635 TCGTTTTATATA-TTTTTCTGAATTAATTTCAAA
12415 TTAAATCGAAACAAGATTAAAATGCTCGTAAAAACAAATCCTCAATTGCTACATGGCTAAGTTTT
1 TTAAATCGAAACAAGATTAAAATGCTCGTAAAAACAAATCCTCAATTGCTACATGGCTAAGTTTT
* *
12480 TATTAGATGAATATAGATATTTCAAGGAGTCTTGATGCCAAAAATCAAGCAAAACTGAGTCGGGT
66 TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGTCGGGT
* *
12545 CCCCGAAACGCGTTTTTAGCAAAAAATCGTGT--TGGTTAGTACACGATTTTGGCTAAAATTTTG
131 CCCCGAAACGCGTTTTTAGCCAAAAACCGTGTGATGGTTAGTACACGATTTTGGCTAAAATTTTG
*
12608 CAAAAAATGACCACGAAAAATTTTTCCTCAATTTTTGGATAAAATACTCATAAAATATATATAAC
196 CAAAAAATGACCGCGAAAAATTTTTCCTCAATTTTTGGATAAAATACTCATAAAATATATATAAC
12673 TAAACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATA-TTTTTTCTGAT
261 TAAACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTTCTGAT
* *
12737 TAAATTTCTAATTATATCGAAACAAGATTAAAACGCTCGTAAAAACAAATCCTTAAACGCTAAAT
326 TAAATTTCTAATTAAATCGAAACAAGATTAAAACGCTCGTAAAAACAAATCCTTAAACGCTACAT
*
12802 GGCTAAGTTTTTATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAA
391 GGCTAAGTTTTTATTAAATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAA
* * *
12867 CTGAGCCGGGTCCTTGAAACGCGGTTTTAACCAAAAACCGTGATGGTTCGTACACGATTTTGGCT
456 CTGAGCCGGGTCCTTGAAACGCGTTTTTAGCCAAAAA-CGTGATGGTTAGTACACGATTTTGGCT
* *
12932 AAAATTTTGCAAAAAACGACTACGAAAATTTTTTCCTCAATTTTTGGATAAAATAATCAGAAAAT
520 AAAATTTTGCAAAAAACGACCACGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCAGAAAAT
* * *
12997 ATATATAATTTAAGGCAAAAAATATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTT
585 ATATATAATTTAAAGCCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTT
13062 TTCTGAATTAATTTCAAA
650 TTCTGAATTAATTTCAAA
13080 TTAAATCGAAACAAG
1 TTAAATCGAAACAAG
13095 CTTC
Statistics
Matches: 1266, Mismatches: 78, Indels: 42
0.91 0.06 0.03
Matches are distributed among these distances:
665 35 0.03
666 305 0.24
667 170 0.13
670 1 0.00
671 1 0.00
673 1 0.00
674 124 0.10
676 2 0.00
677 131 0.10
678 1 0.00
680 1 0.00
681 1 0.00
683 389 0.31
684 104 0.08
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (667 bp):
TTAAATCGAAACAAGATTAAAATGCTCGTAAAAACAAATCCTCAATTGCTACATGGCTAAGTTTT
TATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGTCGGGT
CCCCGAAACGCGTTTTTAGCCAAAAACCGTGTGATGGTTAGTACACGATTTTGGCTAAAATTTTG
CAAAAAATGACCGCGAAAAATTTTTCCTCAATTTTTGGATAAAATACTCATAAAATATATATAAC
TAAACACCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTTTTTCTGAT
TAAATTTCTAATTAAATCGAAACAAGATTAAAACGCTCGTAAAAACAAATCCTTAAACGCTACAT
GGCTAAGTTTTTATTAAATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAA
CTGAGCCGGGTCCTTGAAACGCGTTTTTAGCCAAAAACGTGATGGTTAGTACACGATTTTGGCTA
AAATTTTGCAAAAAACGACCACGAAAATTTTTTCCTCAATTTTTGGATAAAATACTCAGAAAATA
TATATAATTTAAAGCCAAAAAGATTCGAGGACTTTTAACGCTTTTAATATCGTTTTATATATTTT
TCTGAATTAATTTCAAA
Done.