Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018369.1 Corchorus olitorius cultivar O-4 contig18402, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131528

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--759
333
2.3
332
87
3
1042
38
14
13
33
1.86
752--784
10
3.5
10
84
16
52
69
0
0
30
0.88
11242--11291
18
2.7
19
81
6
59
32
2
8
58
1.39
11475--11500
13
2.0
13
100
0
52
92
7
0
0
0.39
20177--20554
199
1.9
199
85
2
517
26
16
17
38
1.92
28808--28845
19
2.0
19
100
0
76
36
5
15
42
1.70
36438--36480
21
2.0
21
82
8
52
48
2
4
44
1.36
37364--37448
25
3.2
25
64
23
66
42
28
3
25
1.72
37366--37477
54
2.1
54
98
0
215
41
27
3
27
1.72
78445--78471
2
13.5
2
100
0
54
48
0
0
51
1.00
90052--90143
24
3.8
24
88
0
139
29
40
19
10
1.86
90042--90155
48
2.4
48
86
0
165
28
40
19
12
1.87
90103--90179
36
2.1
36
92
0
127
27
38
22
11
1.88
90042--90179
12
11.5
12
74
0
114
28
39
20
11
1.87
95400--95487
45
2.0
45
86
0
122
38
23
5
31
1.78
99615--99651
19
1.9
19
94
0
65
16
35
13
35
1.88
99723--99759
19
1.9
19
94
0
65
29
16
13
40
1.86
107579--107603
10
2.5
10
100
0
50
12
40
0
48
1.40
113506--113592
27
3.3
27
63
15
72
26
21
10
41
1.85
116676--116702
3
9.0
3
100
0
54
33
33
0
33
1.58
122705--122833
60
2.2
60
77
2
134
37
14
14
33
1.87
122945--123072
60
2.1
60
80
5
152
37
16
14
31
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129567--129598
11
2.9
11
95
0
55
18
9
12
59
1.59
129624--129663
6
7.3
6
78
21
52
35
15
0
50
1.44
129624--129666
21
2.0
21
95
0
77
37
13
0
48
1.43
129626--129663
15
2.4
17
82
8
53
34
15
0
50
1.45
129848--130099
22
11.3
23
71
12
116
34
10
16
38
1.83
129848--129927
24
3.5
23
86
8
92
36
8
17
37
1.81
129848--130112
111
2.4
109
73
16
238
35
9
16
37
1.82
130154--130206
21
2.5
22
75
12
56
43
7
16
32
1.76
130329--131503
333
3.5
331
83
4
1235
31
17
16
34
1.92

Tables:   1

The End!