Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018370.1 Corchorus olitorius cultivar O-4 contig18403, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6871

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--923
333
2.8
328
89
3
1377
32
17
16
34
1.92
1555--1631
40
1.9
40
89
0
118
37
7
18
36
1.80
1228--1966
375
2.0
363
88
3
1075
32
15
17
34
1.91
989--5132
711
6.0
668
76
12
3351
31
16
17
34
1.92
2257--2994
375
2.0
374
93
0
1253
32
16
16
34
1.92
1595--4716
335
9.1
334
71
13
2017
32
16
16
34
1.92
3633--3709
40
1.9
40
94
0
136
35
9
19
36
1.84
3297--4044
375
2.0
376
93
1
1295
32
16
17
33
1.93
4680--4756
40
1.9
40
97
0
145
33
9
20
36
1.85
5260--5304
23
2.0
23
81
0
54
26
20
15
37
1.92
6497--6627
67
2.0
67
96
0
244
48
17
15
19
1.82
6622--6871
2
124.5
2
97
2
475
49
0
50
0
1.06

Tables:   1

The End!