Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018371.1 Corchorus olitorius cultivar O-4 contig18404, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27519

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--81
2
40.5
2
77
4
65
3
41
6
48
1.46
1--81
24
3.3
24
84
3
90
3
41
6
48
1.46
1--80
42
1.9
42
89
0
124
3
41
6
48
1.46
2--81
22
3.7
22
76
6
74
3
41
6
48
1.46
91--129
13
3.0
13
84
0
51
41
43
0
15
1.46
128--183
12
4.7
12
84
0
67
7
33
7
51
1.56
139--219
14
5.6
14
76
5
72
3
38
4
53
1.41
137--222
12
7.0
12
76
5
73
3
38
5
52
1.43
168--228
18
3.3
18
75
8
68
3
44
3
49
1.35
12--369
147
2.4
148
87
3
495
15
39
4
40
1.68
286--406
2
60.5
2
73
3
91
3
40
7
48
1.47
275--356
16
5.2
16
82
5
105
4
36
7
51
1.51
288--406
22
5.4
22
78
6
107
3
40
7
48
1.48
407--454
21
2.3
21
96
3
89
43
45
0
10
1.38
211--582
179
2.1
174
81
5
426
14
39
5
39
1.70
407--455
7
7.1
7
77
13
57
42
44
0
12
1.41
475--647
2
85.5
2
82
3
186
2
41
5
50
1.39
630--829
66
3.0
66
93
2
339
18
18
17
46
1.85
4655--4785
42
3.1
42
75
10
115
33
13
11
41
1.81
5082--5145
30
2.2
29
83
8
78
46
14
7
31
1.72
5536--5618
42
2.0
42
92
4
141
33
9
13
43
1.76
7830--7859
7
4.3
7
95
0
51
10
60
16
13
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10036--10065
2
15.0
2
100
0
60
50
0
0
50
1.00
10825--10849
11
2.3
11
100
0
50
44
0
36
20
1.52
17413--17442
1
30.0
1
100
0
60
100
0
0
0
0.00
19738--19771
17
2.0
17
100
0
68
29
17
11
41
1.85
23343--23380
18
2.1
18
100
0
76
36
21
5
36
1.76
24163--24199
15
2.5
15
86
0
56
21
43
10
24
1.84

Tables:   1

The End!