Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018373.1 Corchorus olitorius cultivar O-4 contig18406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33570

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
612--639
3
9.3
3
100
0
56
32
0
0
67
0.91
3011--3301
145
2.0
145
93
2
505
37
9
16
36
1.82
3421--3471
17
3.1
15
78
15
57
74
13
9
1
1.15
5389--5422
2
17.0
2
100
0
68
50
0
0
50
1.00
25593--25617
6
4.2
6
100
0
50
0
0
68
32
0.90
28128--28152
5
5.0
5
100
0
50
0
20
0
80
0.72
30261--30292
2
16.0
2
100
0
64
50
0
0
50
1.00
33142--33201
30
2.0
30
100
0
120
30
23
16
30
1.96

Tables:   1

The End!