Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018375.1 Corchorus olitorius cultivar O-4 contig18408, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 32162
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Found at i:1209 original size:20 final size:20
Alignment explanation
Indices: 1184--1223 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
1174 AATTACAAAC
1184 AAACTCACATTCCGTGAGAG
1 AAACTCACATTCCGTGAGAG
1204 AAACTCACATTCCGTGAGAG
1 AAACTCACATTCCGTGAGAG
1224 TTGAACCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (20 bp):
AAACTCACATTCCGTGAGAG
Found at i:3047 original size:48 final size:48
Alignment explanation
Indices: 2991--3086 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
2981 TGCTCACTAA
2991 GAGTTTCGTAGGTATATTAATGCAAATCTTGCTTGTCGACTTACGAGC
1 GAGTTTCGTAGGTATATTAATGCAAATCTTGCTTGTCGACTTACGAGC
3039 GAGTTTCGTAGGTATATTAATGCAAATCTTGCTTGTCGACTTACGAGC
1 GAGTTTCGTAGGTATATTAATGCAAATCTTGCTTGTCGACTTACGAGC
3087 TTCAAAGTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (48 bp):
GAGTTTCGTAGGTATATTAATGCAAATCTTGCTTGTCGACTTACGAGC
Found at i:3223 original size:10 final size:10
Alignment explanation
Indices: 3208--3237 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
3198 TTTTATCTCT
3208 AAAAAAGAAA
1 AAAAAAGAAA
3218 AAAAAAGAAA
1 AAAAAAGAAA
*
3228 AAAGAAGAAA
1 AAAAAAGAAA
3238 GTAGTGATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:4138 original size:22 final size:20
Alignment explanation
Indices: 4105--4152 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 20
4095 TGCATAGATA
4105 TATATAGACATAAG-ATATAC
1 TATATAGACATAAGCATAT-C
*
4125 TATATAGGATCATATGCATATC
1 TATATA-GA-CATAAGCATATC
4147 TATATA
1 TATATA
4153 TCTATCACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 6 0.25
21 2 0.08
22 12 0.50
23 4 0.17
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.35
Consensus pattern (20 bp):
TATATAGACATAAGCATATC
Found at i:5892 original size:27 final size:27
Alignment explanation
Indices: 5860--5918 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
5850 ATAAACGATT
5860 AATTTAGTCTACTTGACACTTTGGATC
1 AATTTAGTCTACTTGACACTTTGGATC
5887 AATTTAGTCTACTTGACACTTTGGATC
1 AATTTAGTCTACTTGACACTTTGGATC
5914 AATTT
1 AATTT
5919 CGTCCCTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (27 bp):
AATTTAGTCTACTTGACACTTTGGATC
Found at i:11182 original size:2 final size:2
Alignment explanation
Indices: 11175--11201 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11165 TAATTATTAC
11175 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
11202 GAAATGGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11528 original size:11 final size:11
Alignment explanation
Indices: 11508--11542 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
11498 TTGACAGCGC
11508 AACAAAAACAA
1 AACAAAAACAA
*
11519 AACGAAAACAA
1 AACAAAAACAA
11530 AACAAAAACAA
1 AACAAAAACAA
11541 AA
1 AA
11543 AACAGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.80, C:0.17, G:0.03, T:0.00
Consensus pattern (11 bp):
AACAAAAACAA
Found at i:11701 original size:19 final size:19
Alignment explanation
Indices: 11677--11713 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
11667 TATCTAACTT
11677 TTCTATTTTGATAATATCG
1 TTCTATTTTGATAATATCG
11696 TTCTATTTTGATAATATC
1 TTCTATTTTGATAATATC
11714 ATTTTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.11, G:0.08, T:0.54
Consensus pattern (19 bp):
TTCTATTTTGATAATATCG
Found at i:13774 original size:30 final size:25
Alignment explanation
Indices: 13714--13765 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
13704 GAGTATTATT
13714 AACAAATGAAATGAAATGATTAAAA
1 AACAAATGAAATGAAATGATTAAAA
13739 AACAAATGAAATGAAATGATTAAAA
1 AACAAATGAAATGAAATGATTAAAA
13764 AA
1 AA
13766 GGAGACAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.19
Consensus pattern (25 bp):
AACAAATGAAATGAAATGATTAAAA
Found at i:17851 original size:31 final size:31
Alignment explanation
Indices: 17816--17883 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
17806 CAATTTTCTA
17816 TTCGAATTATATTATTTGATACGTAGAAAAT
1 TTCGAATTATATTATTTGATACGTAGAAAAT
* * *
17847 TTCGATTTATATTGTTTGATATGTAGAAAAT
1 TTCGAATTATATTATTTGATACGTAGAAAAT
17878 TTCGAA
1 TTCGAA
17884 AGTATTATGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (31 bp):
TTCGAATTATATTATTTGATACGTAGAAAAT
Found at i:22282 original size:338 final size:333
Alignment explanation
Indices: 21602--32157 Score: 11317
Period size: 330 Copynumber: 31.6 Consensus size: 333
21592 TTGATAAATA
* *
21602 GGCGGCAAAAATCATGCAAAATTGA-ACGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * * * * *
21666 GGTTAATACACGATTTCGGTTACAATTTTTCAAAAATTGACTCAAAAGATTTTTCCTCGATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* * * * * *
21731 GGCCACAATACTCATAAAAAATATCTAATACAAAGCCAGAAAGATTGAAGGCCTTTTAACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
* *
21796 TT-G--G---TT-GTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTTAGATGC
196 TTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGATGC
* **
21854 TCGTAAAAACAAATCCTTAAATTCTAAATGGCTGTCATTTGGTTAGATTAAAATAGATATTTCAA
261 TCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAA
21919 GGAGTCAT
326 GGAGTCAT
* * *
21927 -GCAGCCAAAAATCATGCAAAATTGAGCCGGGTACCCGGAACGCGTTTTTAGCCGAAAACCGTGG
1 GGC-GCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGA
* * * * * *
21991 TGGTTAGTGCATGATTTCGGCTACAATTTTGCTAAAATTGACCCGGAAGAATTTTCCTCAATTTA
65 TGGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTT
* *
22056 TGGCCACAATACTCATAAAGAATATCGAATTCAAAGCCAAAAAGACAGAAGGTCTTTTCACGCTT
130 TGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTT
*
22121 CTTAGTTGTTTTTCTTTTTTTTTTAATTTTCCGAATTAATTTTTTATTAAATCGAACTATGATTC
195 CTTAGTTGTTTTTC---TTTTTTT--TTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTC
* *
22186 AGATGCTCGTAAAAACAAATCCTTATATTCAAAATGG-TCGTGATTTGGTTAGATTAAAATAGAT
255 AGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCT-GAGATTTGGTTAGATTAAAATAGAT
*
22250 ATTTAAAGGAGTCAT
319 ATTTCAAGGAGTCAT
* ** * * * *
22265 GGCGCCAAAAATCATGCAGAATTGAGCCGGGTTTCCGGAAAGCGTTTTTAACCGAAAACCGTGAA
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
*
22330 GGTTAGTACACGATTTCGGCTACAATTTTGCTAAAATTGACCCGAAAGATTTTTCCTCAAGTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAA-TTTT
* * * *
22395 TGACCACAATATTCATAAAGAATATCTAATTCAAAGCCAGAAAGACTGAAGGCCTTTTCACGCTT
130 TGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTT
* * *
22460 CTTAGTTGTTTTACTTTTTCTTTTTATTTCCCGAATTAATTTTTTATTATATCTAACCATGATTC
195 CTTAGTTGTTTT--TCTTT-TTTTT-TTT-CCGAATTAATTTTTTATTAAATCGAACCATGATTC
* * *
22525 AGATGCTCGTAAAAACAAATCGC-TAAATCCTAAATGGGTGAGATTTGGTTAGATTAAAATAGAT
255 AGATGCTCGTAAAAACAAATC-CTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGAT
22589 ATTTCAAGGAGTCAT
319 ATTTCAAGGAGTCAT
* * * * * *
22604 GGCGCCAAAAATCATGCAAAATTGAGCTGGGTCCGCGGAACGCGTTTTTAGCCGAAAATCATGAC
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * *
22669 GGTTAGTACACTATTTCGGCTACAATTTTGCAAAAATAGACCCGAAAGATTTTTCCACAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* * ** * * *
22734 AGCCACAATACTCATTAAA-AATATATAATTCAGGGCCATAAATA-TAGAAGGGT-TTGT-ACCG
131 GGCCACAATACTCA-TAAAGAATATCTAATTCAAAGCCAAAAAGACT-GAA-GGTCTTTTCA-CG
* * **** * *** * * *
22795 TTTCTAATA-TCG-TTTTCCCCATTTTTTT-CGAATTAATATCCAAGTAAATC-ATAACTTGATT
192 CTTCT--TAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGA-ACCATGATT
* * * * *
22856 CTGATGCTCGTAAAAACAAATCCTTAAA-TC-CAATGTCATTGAGATTTAGTTAGATTAAAATGG
254 CAGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGC--TGAGATTTGGTTAGATTAAAATAG
*
22919 ATATTTCAAGGAATCGA-
317 ATATTTCAAGGAGTC-AT
* * *
22936 GGCGCCAAAAATCATGCAAAACTGAGCCGGATCCACGGAACGCGTTTTTAGCCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
** * * * * *
23001 AATTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAGGATTTTTACTCAGTTTCT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* * * * *
23066 GGCCACAATAATCAGAAAGAATATCTAATTCAAAACCAGAAAGACTGAAGGCCTTTTCACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
* *
23131 TTA---G---TTC-TTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAATCATGATTTAGATGC
196 TTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGATGC
* * * * *
23189 TCGTAAAAACAAATTCTTAAATCCTAAATGGCTGAGATTTGGTCAGATTAACATAGATATTTCAA
261 TCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAA
23254 GGAGTCAT
326 GGAGTCAT
* * *
23262 GACGCCAAAAATCATGCAAAATTGAGCCGGGTGCTCGGAACGCGTTTTTAGCCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
23327 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
23392 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
* * *
23457 TTAGTTG--TTT-TTTTTTCTTTCCCGAATTAATTTTTTATTATATCGAACCATGATTCAGATGC
196 TTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGATGC
* * *
23519 TCGTAAAATCAAATCCTTAAATTCAAAATGGCTGTGACTTGGTTAGATTAAAATAGATATTTCAA
261 TCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAA
23584 GGAGTCAT
326 GGAGTCAT
* * *
23592 GGCGCCAAAAATCACGTAAAATTGAGTCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * * * * ** * * * * *
23657 -GCTACTCCTAATTTTC-ATTATACTGATTTAGATTTATCCTAATCGTATTGATTTATCCTAAAG
66 GGTTAGTAC--A----CGATT-T-CGGCTACA-ATTT-TGC-AA----A--AATTGACCCGAAAG
* ** * *** ** **** * *
23720 ATTTCATT--TCAATAGGAATTTGG--TTATTCAC-CATGTTCGAGGATC-CCCGCTAAG-CATC
114 ATTT--TTCCTCAAT----TTTTGGCCACAAT-ACTCAT-AAAGAATATCTAATTCAAAGCCA-A
* * * *** * * * * * *** *** *** * **
23778 CATGGCTGAATGGT-TAAAGCGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTAATGG
170 AAAGACTGAA-GGTCT-TTTCACGC--TTCTTAGTT-G-TTTTTC-TTTTTTTTTTTCCGAATTA
** *** * * * * * * * * *
23842 A---TGCACGCCAATGGGACCCTCCAATAAG-T-CTATCTGTTAAAGTAA-AGGATACAT-AATT
228 ATTTTTTA-TTAAATCGAACCAT-GATTCAGATGC--TC-G-TAAA--AACA-AATCCTTAAATT
* ** * ** * ***** *
23900 -ACAATTACAT-A-ATTT--TGA-AAAAAAAAAGAATATTTCATTTTTTCCT
284 CAAAATGGC-TGAGATTTGGTTAGATTAAAATAG-ATATTTCAAGGAGTCAT
****** ** * **** ****** * * * **
23946 TTAATTATATTTAATTAT-ATGTC-ATTTTGATTTCATTATATTTTTATATGTCATTTTGATTTC
1 GGCGCCA-A---AA--ATCATG-CAAAATTGA--GCCGGGTCCCCGGA-ACG-CGTTTTTA-GCC
* * *** * * ** * *** ** ** * **
24009 ATTATATTTTTAT-ATTTTTATATTTTTATATG-T-C-ATTTTGATTTCATTATATTTTTA-TAG
54 A-AAAACCGTGATGGTTAGTACACGATT-TCGGCTACAATTTTG----CA--A-AAATTGACCCG
* * *** * * ** * * * ***
24069 TACACGAATTCAGCTACAA-TTTT-GCAAAAATTGAC-CCGAAAGATTTTTCCACAATTTTTAGC
110 -A-AAGATTTTTCCT-CAATTTTTGGCCACAA-T-ACTCATAAAGA-ATAT-C-TAATTCAAAGC
* ** * * * * * *
24131 CACAATACTCATTAAGAATATATAATTCAGGGCCATAAATATAGAAGGGTTTGTCCCGTTTCTAA
167 CA-AAAAGAC-TGAAG-GTCT-T--TTCA-CG-C-T---TCT--TA--G--T-T---G-TT-T--
* * * * * *
24196 TATCGTTTTCCCCATTTTTTT-CGAATTAATATCTAATTAAATCATAACTA-GATTCTGATGCTC
206 T-TC-TTTT-----TTTTTTTCCGAATTAATTTTTTATTAAATC-GAACCATGATTCAGATGCTC
* * ** * * *
24259 GTAAAAATAAATCCTTAAATCCAATTTTGCTGAGATTTGGTTTGATTAAAATTGATATTTCAAGG
263 GTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGG
* *
24324 AATCAA
328 AGTCAT
* * *
24330 GTCGCCAAAAATCTTGCAAAATTGAGCCTGGGTCCTCGGAACGCGTTTTTAGCCAAAAACCGTGA
1 GGCGCCAAAAATCATGCAAAATTGAGCC-GGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGA
* ** * *
24395 T-G---GT------TTTCGGCTACAATTTTGTAAACTTTGACCCGAAACATTTTTCCTTAATTTT
65 TGGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTT
* * *
24450 TGGCCACAATAGTCATAAAGAATATCTAATTCCAAGCCAAAAAGACTGAAGGTCTTTTCATGCTT
130 TGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTT
* *
24515 CTTAGTTG-------TTTTTTTTTT-CGAATTAATTTTTTATTAAATCAAACGATGATTCAGATG
195 CTTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGATG
* *
24572 CTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGTGATTTGGTTAGATTAACATAGATATTTCA
260 CTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCA
24637 AGGAGTCAT
325 AGGAGTCAT
* *
24646 GGAGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAACCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* *
24711 GGTTAGTACCCGATTTCGGCTACAATTTTGCAAAAATTGACCCGGAAGATTTTTCCTCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* * * *
24776 GGCCACAATACTC-TAAAGAATATCTAATTCAGAGCCAGAAAGACTGAAGGCCTTTTCACGGTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
*
24840 TTAGTTGTTTTTCTTTTATCTTTTTCTTTTCCGAATTAATTTTTTATTCAATCGAACCATGATTC
196 TTAGTTGTTTTTC---T-T-TTTTT-TTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTC
*
24905 AGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGTGATTTGGTTAGATTAAAATAGATA
255 AGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATA
24970 TTTCAAGGAGTCAT
320 TTTCAAGGAGTCAT
* * *
24984 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTACCCGGAACGCGTTTTTAGCCGAAAACCCTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * *
25049 GGTTAGTACACAATTTCGGCAACAATTTTGCTAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* *
25114 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAGGACAT-AAGGTCTTTTGACGCTT
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGAC-TGAAGGTCTTTTCACGCTT
* *
25178 CTTAGTTGTTTTTATTTTTTTAAATTTTCCGAATTAA-TTTTTATTAAATCGAACCATGATTTAG
195 CTTAGTTGTTTTTCTTTTTTT---TTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAG
* * *
25242 ATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGTTGTGATTTGGATAGATTAAAATAGATATT
257 ATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATT
25307 TCAAGGAGTCAT
322 TCAAGGAGTCAT
* * * * * *
25319 GGAGCCAAAAATCATGCAAAATTGAGCTGGATACCCGGAATGCGTTTTTAGCCGAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* *
25384 GGCTAGTACACGATTTCGGCTACAATTTTGCTAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
*
25449 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACAGAAGGTCTTTTCACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
*
25514 TTAGTTGTTTTTCTTTCTTTTTTTTAAATTTTCCGAATTAATTTTTTATTAAACCGAACCATGAT
196 TTAGTTG---TT-TTTC-TTTTTTT---TTTTCCGAATTAATTTTTTATTAAATCGAACCATGAT
*
25579 TCAGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGTGATTTGGTTAGATTAAAATAGA
253 TCAGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGA
25644 TATTTCAAGGAGTCAT
318 TATTTCAAGGAGTCAT
* * * * *
25660 GGAGCCAAAAATCATGCAAAATTGAGCCGGGTACACGGAACGCATTTTTAGCCGAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* *
25725 GGTTAGTACACGATTTCGGCTACAATTTTGCTAAAATTGACCCGAATGATTTTTCCTCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* * *
25790 GGCAACAATATTCATAAAGAATATCTAATTCAAAGCCAAAAAGACAGAAGGTCTTTTCACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
*
25855 TTAGTTGTTTTTCTTTTTTTTCTTATTTTCCGAATTAATTTTTTATTAACTCGAACCATGATTCA
196 TTAGTTGTTTTTC---TTTTT-TT-TTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCA
* *
25920 GATGCTCGTAAAAACAAATCCTTATATTCAAAATGG-TCGTGATTTGGTTAGATTAAAATAGATA
256 GATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCT-GAGATTTGGTTAGATTAAAATAGATA
25984 TTTCAAGGAGTCAT
320 TTTCAAGGAGTCAT
* * ** *
25998 GGCCCCAAAAATCATGCAGAATTGAGCCGGGTTTCCGGAACGCGTTTTTAACCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * *
26063 GGTTAGTACACGATTTCGGCTACACTTTTGCAAAAATTGACCCGGAAGATTTTTCATCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* *
26128 GGCCACAATACTCATAAAGAATATCTAATTCAATGCCAAAAAGACTGAAGGCCTTTTCACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
*
26193 TTAGTTGTTTTTGTTTTCTCTTTTTTTTTTTCCGGAATT-AGTTTTTATTAAATCGAACCATGAT
196 TTA---G---TTGTTTT-TCTTTTTTTTTTTCC-GAATTAATTTTTTATTAAATCGAACCATGAT
* * * * *
26257 TTATATGCTCGTAAAAATAAATCCTTAAATTCTAAATGGCTGTGATTTGGTTAGATTAAAATAGA
253 TCAGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGA
26322 TATTTCAAGGAGTCAT
318 TATTTCAAGGAGTCAT
* * * * *
26338 GGCACCAAAAATCATGCAAAATTGAGCCGAGTACTCGGAACGCGTTTTTAGCAAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
*
26403 GGTTAGTACACGATTTTGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTC-ATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* * * * *
26467 GGCCACCAATACTCGTAAAGTAAGTAACTAATTCAAAGCCAGAAAGATTGAAGGCCTTTTCACGC
131 GGCCA-CAATACTCATAAAG-AA-TATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGC
*
26532 TTCTTAGTTGTTTCTTTTTCTTTTTTCATTTCCGAATTAATTTTTTATTAAATCGAACCATGATT
193 TTCTTAGTTGTTT-TTCTT-TTTTTT--TTTCCGAATTAATTTTTTATTAAATCGAACCATGATT
* * *
26597 CAGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGTTGAGATTTGGTCAGATTAAGATAGAT
254 CAGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGAT
*
26662 ATTTCAACGAGTCAT
319 ATTTCAAGGAGTCAT
* *
26677 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTACCCGGAACGCGTTTTTAGCCAAAAACTGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * * * *
26742 GGTTAATACACGATTTCTGCTACAATTTTGC-AAAATTAATCCGAAAGATTTTTCCTCATTTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* *
26806 GGCCACAATACTCATAAAGAATATCTAATTGAAAGCCAAAAAGACTGAAGGCCTTTTCACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
* *
26871 TTAGTTGTATTTTC---TTTTTTTTCCGAATTAACTTTTTATTAAATCGAACCATGATTCAAATG
196 TTAGTTGT-TTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGATG
* * * * *
26933 CTTGTAAAAACAAATCCTGAGATCCTAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCA
260 CTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCA
*
26998 AGGAATCAT
325 AGGAGTCAT
*
27007 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAC
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * *
27072 GGTTAATACACGATTTCGGCTACAATTTTGCAAGAATTGACCCGAAAGATTTTTCCTCATTTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* *
27137 GGCCACAATACTGATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTGACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
* *
27202 CTAGTTGTTTTTC---TTTTTTTTCCGAATTAATTTTTGATTAAATCGAACCATGATTCAGATGC
196 TTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGATGC
* *
27264 TCGTAAAAACAAATCCTTAAATTCAAAATCGCTGAGATTTGGTCAGATTAAAATAGATATTTCAA
261 TCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAA
27329 GGAGTCAT
326 GGAGTCAT
* * * *
27337 GGTGCCTAAAATCAAGCAAAATTGAGCCGGGTCCCCTGAACGCGTTTTTAGCCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
*
27402 GGTTAGTACACGATTTCTGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAA-TTTT
* * * * *
27467 TGGCCACAATAGTCATAAATAATATCTAATTCAAAGCCAATAGGACTGAAGGCCTTTTCACGCTT
130 TGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTT
* * * *
27532 CTTAGTTGTTTATC---TTTTTTTTCAGAATTAATTTTTGATTAAATCGAACCAAGATTCAGATG
195 CTTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGATG
* * *
27594 CTTGTAAAAACAAATCCTTAAATCCTAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCA
260 CTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCA
* *
27659 AGGAATCGT
325 AGGAGTCAT
*
27668 GGCGCCAAAAATCATGCAAAATTGAGTCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
*
27733 GGGTTAGTACACGATTTCGGCTA-ATATTTTGCAAAAATTGACCCGGAAGATTTTTCCTCAATTT
66 -GGTTAGTACACGATTTCGGCTACA-ATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTT
*
27797 TTGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCATTTCACGCT
129 TTGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCT
* *
27862 TCTTAGTTGTTTTTC-TTTTTTTTTCCCGAAATAATTTTTTATTAAATCGAACCATGATT-ATGA
194 TCTTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCA-GA
* * ** * *
27925 AGCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATTAAAATATATATTT
258 TGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTT
*
27990 CAAGGAGTCAC
323 CAAGGAGTCAT
* *
28001 GGCGCCAAAAGTCATGCAAAATTGAGCCGGGTCCGCGGAACGCGTTTTTAGCCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
** *
28066 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACATGGAAGATTTTTCCTCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* * *
28131 GGCCACAATACTGATAAAGAATATCTAATTCAAAGCCAGAAAGACTGAAGGTCTTTTGACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
* *
28196 TTAGTTGTTTTTCTTTTCTCTTTTTTTTTCCCGAATTAATTTTTTATTAAATCTAACCATGATTT
196 TTAGTTGTTTTTC---T-T-TTTTTTTTT-CCGAATTAATTTTTTATTAAATCGAACCATGATTC
* * * * *
28261 AGATGCTCGTAAAAACAAATCCTTAAATCCTAAATGGATGTGATTTGGTTAGATTAACATAGATA
255 AGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATA
*
28326 TTTCAAGGTA-TCAC
320 TTTCAAGG-AGTCAT
* * *
28340 GGTGCCAAAAGTCATGCAAAATTGAGCGGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
*
28405 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCATTTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
*
28470 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAGAAAGACTGAAGGCCTTTTCACGCTT
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAA-AAAGACTGAAGGTCTTTTCACGCTT
* * * * *
28535 CTTAGTTGTTTTTCCTTTTCTTTTTTTCAGAATTAATTTTCTGTTAAATCGAACCATAAGTCAGA
195 CTTAGTTGTTTTT-CTTTT-TTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGA
* * * *
28600 TGCTTGTAAAAACAAATCCTTAAATCCTAAATGGCTGAGATTTGGTTAGATTAACATAGATATTT
258 TGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTT
28665 CAAGGAGTCAT
323 CAAGGAGTCAT
* * * *
28676 GGCGCCAAAAATAATGCAAAATTGAGCCGGGTCCCCGGAACGCCTTTTTTGCCAAGAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* *
28741 GGTTAGAGTACACGATTTCGGCTACAATTTTGCTAAAATTGACCCGAAAGATTTTTCCACAATTT
66 GGTT--AGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTT
* *
28806 TTGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAGAAAGACTGAAGGCCTTTTCACGCT
129 TTGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCT
* * *
28871 TCTTAGTTGTTGTTGTTGTTGTTTTTTTTTTCGAATTAATTTTTTATTAAATCAAACCATGATTC
194 TCTTAGTTG-T-TT-TTCTT-TTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTC
* * *
28936 ATATGCTCGTAAAAACAAATCTTTAAATTCTAAATGGCTGAGATTTGGTTAGATTAAAATAGATA
255 AGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATA
29001 TTTCAAGGAGTCAT
320 TTTCAAGGAGTCAT
* *
29015 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACACGTTTTCAGCCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
*
29080 GGTTAGTACACTATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
29145 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
* * * *
29210 TTAATTGTTTTTCTTTCTTTTTTTCCGAATTAA-TTTTTATTAAAAT-GAACCATGATTTAGTTG
196 TTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATT-AAATCGAACCATGATTCAGATG
* * *
29273 CTCGTAAAAACAAATCCTTAATTTCAAAATGGTTGAGATTTGGTAAGATTAAAATAGATATTTCA
260 CTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCA
29338 AGGAGTCAT
325 AGGAGTCAT
*
29347 GGCGCC-AAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAATCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * * * * *
29411 GACACGAACGCGTT-TTACACGAATTCGGCTACAATTTTGCAAAAAATGACACGAAAAATTTTTT
66 ---------G-GTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTC
* * * * * *
29475 CTCAATTTTTTGCCATAATACTCATCAAGAATATGTAATTCAAAGCCAAAAGGACT----GCCTT
121 CTCAATTTTTGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTT
* *
29536 TTAACGCTTCTTAGTTGTTTTTC--ATTTTTTTT-CGAATTAATTTTTTATTAAATCGAACCATG
186 TTCACGCTTCTTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATG
*
29598 ATTCAGATGCTCG-AAAGAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAAT
251 ATTCAGATGCTCGTAAA-AACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAAT
29662 AGATATTTCAAGGAGTCAT
315 AGATATTTCAAGGAGTCAT
* * * * *
29681 GGCGCCAAAAATCATGCAAAATCGAGACGGGTACCCAGAACGCGTTTTTAGCCAAAAACTGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * *
29746 GGTTTA-TACACGATTTCGGCTACAATTTTGTAAAAATTGACCCGAAAGGTTTATCCAT-AATTT
66 GG-TTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCC-TCAATTT
* * * ** * * * *
29809 TTAGCCACAATACTCATTAA-AATATATAATTCAGGGCCATAAATA-TAGAAGGGT-TTGTCACA
129 TTGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACT-GAA-GGTCTTTTCACG
* * **** * * * *
29871 TTTCTAATA-TCG-TTTTCCCCATTTTTTT-CGAATTAATATCTAATTAAATC-ATAAC-TCGAT
192 CTTCT--TAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGA-ACCAT-GAT
* * * * ** *
29931 TCTGATGCTCTTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATTAAAATTGA
253 TCAGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGA
*
29996 TATTTCAAGGAATCGA-
318 TATTTCAAGGAGTC-AT
* * * * * *
30012 GGCGCCAAAATTCATGCAAAATTGAGGCGGGTCCCCGAAACGCATTTTTAGTCAAAAACTGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* *
30077 GGTTAGTACACGATTTCAGCTACAATTTTGCTAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* * * * *
30142 GGCCACAATACTCATAAAAAATACCCAATTCAAAGACAAAAACACTGAAGGTCTTTTCACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
*
30207 TTAGTTGTTTTTC---TTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGTTGC
196 TTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGATGC
* * *
30269 TCGTATAAACAAATCCTTAAATTCAAAATGGTTGAGATTTGGTAAGATTAAAATAGATATTTCAA
261 TCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAA
*
30334 GGAGTCAA
326 GGAGTCAT
* *
30342 GGCGCCAAAAATCATGCAAAATTGAGTCGGGTCCCCGGAATGCGTTTTTAGCCAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * * *
30407 GGTTAGTACACGAATTCGGCTACAATTTTGCAAAAA-TGCACCCAAAAAAAATTTTCCTCAATTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTG-ACCC-GAAAGATTTTTCCTCAATTT
* *
30471 TTGGCCACAATACTAATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGGCTTTTCACGCT
129 TTGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCT
*
30536 TCTTAGTTGTTTTTC--TTCTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATT-ATGA
194 TCTTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCA-GA
* * * *
30598 TGCTCGTAAAAACGAATCCTTACATCCAATATGGCTGAGATTTGGTTAGATTAAAATAGATATTT
258 TGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTT
30663 CAAGGAGTCAT
323 CAAGGAGTCAT
* * * * *
30674 GGCGCCAAAAATCATGCAAAATTTAGCCGGGTCCGCGGAACGCGTTTTTAGCCTAAATCTGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * * *
30739 GG-TAGTACACGATTTCGGCTACAATTTTGCAATAATTGACCCGAAAGATTTTTCCACTACTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* * * * * ** *
30803 AGCCACAATACTCATTAAA-AATATATAATTCAACGCCATAAATA-TAGAAGGGGTTTTCACGTT
131 GGCCACAATACTCA-TAAAGAATATCTAATTCAAAGCCAAAAAGACT-GAAGGTCTTTTCACGCT
* * * * * * * *
30866 TCTAATA-TCGTTTTTC-CTATTTTTTT--GAATTAATTTCTAATTAAATCGAAACTTGATTCTG
194 TCT--TAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAG
* * * ** ** *
30927 ATGCTCGTAGAAACAAATCTTTAAATCCAATGTGGCTGAGATTTTATTACATTAAAATAGATATT
257 ATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATT
**
30992 TCAAGGAGTTGT
322 TCAAGGAGTCAT
* *
31004 GGCGCCATAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCGAAAAACCGTGAT
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * *
31069 GGTTAGTACACTATTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* * * * *
31134 GGACACAATACTCATAAACAATATCTAATTCAAAGTCAAAGAGACTGAAGATCTTTTCACGCTTC
131 GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
* * * *
31199 TAAGTTGTTTTTC-------TTTTCCGAAATAA-TTTTTATTGAATCGAACCATGATTCTGATGC
196 TTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGATGC
* * * * *
31256 TCGTAGAAACAAATCCTTAAATCCAATATGGCTGAGATTTGATTAGATTAAAATAAATATTTCAA
261 TCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAA
31321 GGAGTCAT
326 GGAGTCAT
* * ** *
31329 GGTGCCAAAAATCATGCAAAATTGAGTCGGGT-CGTGGAACGCGTTTTTAGCAAAAAACC-----
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
**
31388 -G-TA-T--ACGATTTCGGCTACAATTTTGCAAAAATTGACCAAAAAGATTTTTCCTCAATTTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
* * * * *
31448 AGCCACAATACTCATAAA-AAT-TATAATTCAGCA-CCATAATATA-TAGAAGGGT-TTTTCACG
131 GGCCACAATACTCATAAAGAATATCTAATTCA-AAGCCA-AAAAGACT-GAA-GGTCTTTTCACG
* * *** * * *
31508 TTTCTAATA-TCGTTTTTCCCATTTTTTTT--GAATTAATTTCTAATTAAATCGAAAC-TCGATT
192 CTTCT--TAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCAT-GATT
* * * ** * *
31569 CTGATGTTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTGGGTTAGATTAAAATGGAT
254 CAGATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGAT
*
31634 ATTTCAAGGAATCAT
319 ATTTCAAGGAGTCAT
* * *
31649 GGCGCCAAAAATCGTGCAAAATTGAGCTGGGTCTCCGGAAC-CG----T-G-----AA-----A-
1 GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
* * * * *
31697 -GTTACTACACGATTTCGGCTAAAATTTTACCAAAATTGACCCGAAA-AGTTTTTCCAT-ATTTT
66 GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGA-TTTTTCC-TCAATTT
* * * * * ** * * * * * *
31759 TTAGCCATAATAATCATAAAAAATATATAATTCAGTGCCATAAATATTGAAGGGCTTTCCACGTT
129 TTGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCT
* * * * * *
31824 TCTAATA-TCT-TTTTTC-CTATTTTTTT-CGAATTAATTTCTAATTAAATCGAAAC-TCGATTT
194 TCT--TAGT-TGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCAT-GATTC
* *
31884 TGATGCTCGT-AAAA-AAATCCTTAAA-T-AAAATGTGGCTGAGATTTGGTTAGATTAAAATGGA
255 AGATGCTCGTAAAAACAAATCCTTAAATTCAAAA--TGGCTGAGATTTGGTTAGATTAAAATAGA
*
31945 TATTTCAAGGAATCAT
318 TATTTCAAGGAGTCAT
* ** * *
31961 GGCGCCAAAAATCATGCAAAATTGA-CTCTGGTCCTGGGAACGCGTTTTTAGCTAAAAACCATGA
1 GGCGCCAAAAATCATGCAAAATTGAGC-CGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGA
* * * *
32025 AGGTTTGTACACGATTTCGGCTAAAATTTTGCAAATATTGACCCGAAA-AGTTTTTCCTCAATTT
65 TGGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGA-TTTTTCCTCAATTT
* * * *
32089 TTGGCCACAATACTCATAAAGATTATCTAATTCAAAGTCAAAAATACTGAAGGGCTTTTTCACGC
129 TTGGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTC-TTTTCACGC
32154 TTCT
193 TTCT
32158 GATCG
Statistics
Matches: 8717, Mismatches: 1134, Indels: 754
0.82 0.11 0.07
Matches are distributed among these distances:
309 1 0.00
310 6 0.00
311 2 0.00
312 100 0.01
313 101 0.01
314 152 0.02
315 54 0.01
316 126 0.01
317 3 0.00
318 2 0.00
319 9 0.00
320 120 0.01
321 12 0.00
323 2 0.00
324 83 0.01
325 228 0.03
326 487 0.06
327 4 0.00
328 7 0.00
329 34 0.00
330 1137 0.13
331 972 0.11
332 755 0.09
333 207 0.02
334 118 0.01
335 353 0.04
336 280 0.03
337 198 0.02
338 968 0.11
339 1014 0.12
340 395 0.05
341 309 0.04
342 49 0.01
343 1 0.00
344 9 0.00
345 21 0.00
346 2 0.00
347 20 0.00
348 14 0.00
349 6 0.00
350 11 0.00
351 4 0.00
352 4 0.00
353 17 0.00
354 35 0.00
355 21 0.00
356 32 0.00
357 15 0.00
358 19 0.00
359 34 0.00
360 17 0.00
361 5 0.00
362 3 0.00
363 9 0.00
364 4 0.00
365 11 0.00
366 1 0.00
367 7 0.00
371 2 0.00
372 1 0.00
374 6 0.00
375 2 0.00
376 6 0.00
377 4 0.00
378 10 0.00
379 13 0.00
380 7 0.00
381 9 0.00
382 10 0.00
383 10 0.00
384 17 0.00
385 10 0.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (333 bp):
GGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGAT
GGTTAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTT
GGCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
TTAGTTGTTTTTCTTTTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGATGC
TCGTAAAAACAAATCCTTAAATTCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAA
GGAGTCAT
Found at i:23960 original size:10 final size:10
Alignment explanation
Indices: 23949--24062 Score: 82
Period size: 8 Copynumber: 11.9 Consensus size: 10
23939 TTTTCCTTTA
*
23949 ATTATATTTA
1 ATTATATTTC
*
23959 ATTATATGTC
1 ATTATATTTC
*
23969 ATTTTGATTTC
1 ATTAT-ATTTC
23980 ATTATATTT-
1 ATTATATTTC
*
23989 -TTATATGTC
1 ATTATATTTC
*
23998 ATTTTGATTTC
1 ATTAT-ATTTC
24009 ATTATATTT-
1 ATTATATTTC
24018 -TTATATTT-
1 ATTATATTTC
24026 -TTATATTT-
1 ATTATATTTC
*
24034 -TTATATGTC
1 ATTATATTTC
*
24043 ATTTTGATTTC
1 ATTAT-ATTTC
24054 ATTATATTT
1 ATTATATTT
24063 TTATAGTACA
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
8 30 0.36
10 30 0.36
11 24 0.29
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63
Consensus pattern (10 bp):
ATTATATTTC
Found at i:23997 original size:29 final size:29
Alignment explanation
Indices: 23949--24023 Score: 132
Period size: 29 Copynumber: 2.5 Consensus size: 29
23939 TTTTCCTTTA
23949 ATTATATTTAATTATATGTCATTTTGATTTC
1 ATTATATTT--TTATATGTCATTTTGATTTC
23980 ATTATATTTTTATATGTCATTTTGATTTC
1 ATTATATTTTTATATGTCATTTTGATTTC
24009 ATTATATTTTTATAT
1 ATTATATTTTTATAT
24024 TTTTATATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
29 35 0.80
31 9 0.20
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.61
Consensus pattern (29 bp):
ATTATATTTTTATATGTCATTTTGATTTC
Found at i:24030 original size:45 final size:45
Alignment explanation
Indices: 23981--24067 Score: 174
Period size: 45 Copynumber: 1.9 Consensus size: 45
23971 TTTGATTTCA
23981 TTATATTTTTATATGTCATTTTGATTTCATTATATTTTTATATTT
1 TTATATTTTTATATGTCATTTTGATTTCATTATATTTTTATATTT
24026 TTATATTTTTATATGTCATTTTGATTTCATTATATTTTTATA
1 TTATATTTTTATATGTCATTTTGATTTCATTATATTTTTATA
24068 GTACACGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.66
Consensus pattern (45 bp):
TTATATTTTTATATGTCATTTTGATTTCATTATATTTTTATATTT
Found at i:27174 original size:331 final size:329
Alignment explanation
Indices: 24066--32157 Score: 10048
Period size: 331 Copynumber: 24.4 Consensus size: 329
24056 TATATTTTTA
* * * *
24066 TAGTACACGAATTCAGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCACAATTTTTAGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * ** * * * * *
24131 CACAATACTCATTAAGAATATATAATTCAGGGCCATAAATA-TAGAAGGGT-TTGTCCCGTTTCT
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACT-GAA-GGTCTTTTCACGCTTCT
* * * * * * * *
24194 AATA-TCGTTTTCCCCATTTTTTT-CGAATTAATATCTAATTAAATCATAACTA-GATTCTGATG
129 --TAGTTGTTTT--TCTTTTTTTTCCGAATTAAT-TTTTATTAAATC-GAACCATGATTCAGATG
* ** * * *
24256 CTCGTAAAAATAAATCCTTAAATCCAATTTTGCTGAGATTTGGTTTGATTAAAATTGATATTTCA
188 CTCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCA
* * * * *
24321 AGGAATCAAGTCGCCAAAAATCTTGCAAAATTGAGCCTGGGTCCTCGGAACGCGTTTTTAGCCAA
253 AGGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCC-GGGTCCCCGGAACGCGTTTTTAGCCAA
24386 AAACCGTGAT-G-
317 AAACCGTGATGGT
* ** * *
24397 --GT------TTTCGGCTACAATTTTGTAAACTTTGACCCGAAACATTTTTCCTTAATTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * *
24454 CACAATAGTCATAAAGAATATCTAATTCCAAGCCAAAAAGACTGAAGGTCTTTTCATGCTTCTTA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
* *
24519 GTTG---TT-TTTTTTTT-CGAATTAATTTTTTATTAAATCAAACGATGATTCAGATGCTCGTAA
131 GTTGTTTTTCTTTTTTTTCCGAATTAA-TTTTTATTAAATCGAACCATGATTCAGATGCTCGTAA
* * *
24579 AAACAAATCCTTAAATTCAAAATGGCTGTGATTTGGTTAGATTAACATAGATATTTCAAGGAGTC
195 AAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGAGTC
* *
24644 ATGGAGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAACCAAAAACCGTG
260 ATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTG
24709 ATGGT
325 ATGGT
* *
24714 TAGTACCCGATTTCGGCTACAATTTTGCAAAAATTGACCCGGAAGATTTTTCCTCAATTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * * *
24779 CACAATACTC-TAAAGAATATCTAATTCAGAGCCAGAAAGACTGAAGGCCTTTTCACGGTTCTTA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
*
24843 GTTGTTTTTCTTTTATCTTTTTCTTTTCCGAATTAATTTTTTATTCAATCGAACCATGATTCAGA
131 GTTG------TTTT-TC-TTTT-TTTTCCGAATTAA-TTTTTATTAAATCGAACCATGATTCAGA
* *
24908 TGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGTGATTTGGTTAGATTAAAATAGATATTT
186 TGCTCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTT
* *
24973 CAAGGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTACCCGGAACGCGTTTTTAGCCG
251 CAAGGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCA
*
25038 AAAACCCTGATGGT
316 AAAACCGTGATGGT
* * *
25052 TAGTACACAATTTCGGCAACAATTTTGCTAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* *
25117 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAGGACAT-AAGGTCTTTTGACGCTTCTT
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGAC-TGAAGGTCTTTTCACGCTTCTT
* *
25181 AGTTGTTTTTATTTTTTTAAATTTTCCGAATTAATTTTTATTAAATCGAACCATGATTTAGATGC
130 AGTTG--TTT-TTCTTTT---TTTTCCGAATTAATTTTTATTAAATCGAACCATGATTCAGATGC
* * * *
25246 TCGTAAAAACAAATCCTTAAATTCAAAATGGTTGTGATTTGGATAGATTAAAATAGATATTTCAA
189 TCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAA
* * * * * *
25311 GGAGTCATGGAGCCAAAAATCATGCAAAATTGAGCTGGATACCCGGAATGCGTTTTTAGCCGAAA
254 GGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAA
*
25376 ACCGTGATGGC
319 ACCGTGATGGT
*
25387 TAGTACACGATTTCGGCTACAATTTTGCTAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
*
25452 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACAGAAGGTCTTTTCACGCTTCTTA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
*
25517 GTTGTTTTTCTTTCTTTTTTTTAAATTTTCCGAATTAATTTTTTATTAAACCGAACCATGATTCA
131 GTTG---TT-TTTC----TTTT---TTTTCCGAATTAA-TTTTTATTAAATCGAACCATGATTCA
* *
25582 GATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGCTGTGATTTGGTTAGATTAAAATAGATAT
184 GATGCTCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATAT
* * * *
25647 TTCAAGGAGTCATGGAGCCAAAAATCATGCAAAATTGAGCCGGGTACACGGAACGCATTTTTAGC
249 TTCAAGGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGC
*
25712 CGAAAACCGTGATGGT
314 CAAAAACCGTGATGGT
* *
25728 TAGTACACGATTTCGGCTACAATTTTGCTAAAATTGACCCGAATGATTTTTCCTCAATTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * *
25793 AACAATATTCATAAAGAATATCTAATTCAAAGCCAAAAAGACAGAAGGTCTTTTCACGCTTCTTA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
*
25858 GTTGTTTTTCTTTTTTTTCTTATTTTCCGAATTAATTTTTTATTAACTCGAACCATGATTCAGAT
131 GTTGTTTTTC------TT-TT-TTTTCCGAATTAA-TTTTTATTAAATCGAACCATGATTCAGAT
* * *
25923 GCTCGTAAAAACAAATCCTTATATTCAAAATGG-TCGTGATTTGGTTAGATTAAAATAGATATTT
187 GCTCGTAAAAACAAATCCTTAAATCCAAAATGGCT-GAGATTTGGTTAGATTAAAATAGATATTT
* * ** *
25987 CAAGGAGTCATGGCCCCAAAAATCATGCAGAATTGAGCCGGGTTTCCGGAACGCGTTTTTAACCA
251 CAAGGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCA
26052 AAAACCGTGATGGT
316 AAAACCGTGATGGT
* * *
26066 TAGTACACGATTTCGGCTACACTTTTGCAAAAATTGACCCGGAAGATTTTTCATCAATTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* *
26131 CACAATACTCATAAAGAATATCTAATTCAATGCCAAAAAGACTGAAGGCCTTTTCACGCTTCTTA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
* * *
26196 GTTGTTTTTGTTTTCTCTTTTTTTTTTTCCGGAATTAGTTTTTATTAAATCGAACCATGATTTAT
131 ---G---TTGTTTT-TC---TTTTTTTTCC-GAATTAATTTTTATTAAATCGAACCATGATTCAG
* * * *
26261 ATGCTCGTAAAAATAAATCCTTAAATTCTAAATGGCTGTGATTTGGTTAGATTAAAATAGATATT
185 ATGCTCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATT
* * * * *
26326 TCAAGGAGTCATGGCACCAAAAATCATGCAAAATTGAGCCGAGTACTCGGAACGCGTTTTTAGCA
250 TCAAGGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCC
26391 AAAAACCGTGATGGT
315 AAAAACCGTGATGGT
*
26406 TAGTACACGATTTTGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTC-ATTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * * * *
26470 CACCAATACTCGTAAAGTAAGTAACTAATTCAAAGCCAGAAAGATTGAAGGCCTTTTCACGCTTC
66 CA-CAATACTCATAAAG-AA-TATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTC
26535 TTAGTTGTTTCTTTTTCTTTTTTCATTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAG
128 TTAGTTG----TTTTTC-TTTTT--TTTCCGAATTAA-TTTTTATTAAATCGAACCATGATTCAG
* * * *
26600 ATGCTCGTAAAAACAAATCCTTAAATTCAAAATGGTTGAGATTTGGTCAGATTAAGATAGATATT
185 ATGCTCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATT
* *
26665 TCAACGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTACCCGGAACGCGTTTTTAGCC
250 TCAAGGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCC
*
26730 AAAAACTGTGATGGT
315 AAAAACCGTGATGGT
* * * * *
26745 TAATACACGATTTCTGCTACAATTTTGC-AAAATTAATCCGAAAGATTTTTCCTCATTTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* *
26809 CACAATACTCATAAAGAATATCTAATTGAAAGCCAAAAAGACTGAAGGCCTTTTCACGCTTCTTA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
* *
26874 GTTGTATTTTCTTTTTTTTCCGAATTAACTTTTTATTAAATCGAACCATGATTCAAATGCTTGTA
131 GTTGT-TTTTCTTTTTTTTCCGAATTAA-TTTTTATTAAATCGAACCATGATTCAGATGCTCGTA
* * * *
26939 AAAACAAATCCTGAGATCCTAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGAAT
194 AAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGAGT
27004 CATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGT
259 CATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGT
*
27069 GACGGT
324 GATGGT
* * *
27075 TAATACACGATTTCGGCTACAATTTTGCAAGAATTGACCCGAAAGATTTTTCCTCATTTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * *
27140 CACAATACTGATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTGACGCTTCCTA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
27205 GTTGTTTTTCTTTTTTTTCCGAATTAATTTTTGATTAAATCGAACCATGATTCAGATGCTCGTAA
131 GTTGTTTTTCTTTTTTTTCCGAATTAATTTTT-ATTAAATCGAACCATGATTCAGATGCTCGTAA
* * *
27270 AAACAAATCCTTAAATTCAAAATCGCTGAGATTTGGTCAGATTAAAATAGATATTTCAAGGAGTC
195 AAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGAGTC
* * * *
27335 ATGGTGCCTAAAATCAAGCAAAATTGAGCCGGGTCCCCTGAACGCGTTTTTAGCCAAAAACCGTG
260 ATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTG
27400 ATGGT
325 ATGGT
*
27405 TAGTACACGATTTCTGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTTGG
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAA-TTTTTGG
* * * * *
27470 CCACAATAGTCATAAATAATATCTAATTCAAAGCCAATAGGACTGAAGGCCTTTTCACGCTTCTT
65 CCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTT
* * * *
27535 AGTTGTTTATCTTTTTTTTCAGAATTAATTTTTGATTAAATCGAACCAAGATTCAGATGCTTGTA
130 AGTTGTTTTTCTTTTTTTTCCGAATTAATTTTT-ATTAAATCGAACCATGATTCAGATGCTCGTA
* *
27600 AAAACAAATCCTTAAATCCTAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGAAT
194 AAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGAGT
* *
27665 CGTGGCGCCAAAAATCATGCAAAATTGAGTCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGT
259 CATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGT
27730 GATGGGT
324 GAT-GGT
*
27737 TAGTACACGATTTCGGCTA-ATATTTTGCAAAAATTGACCCGGAAGATTTTTCCTCAATTTTTGG
1 TAGTACACGATTTCGGCTACA-ATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGG
*
27801 CCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCATTTCACGCTTCTT
65 CCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTT
* *
27866 AGTTGTTTTTCTTTTTTTTTCCCGAAATAATTTTTTATTAAATCGAACCATGATT-ATGAAGCTC
130 AGTTGTTTTTC-TTTTTTTT-CCGAATTAA-TTTTTATTAAATCGAACCATGATTCA-GATGCTC
** * *
27930 GTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATTAAAATATATATTTCAAGG
191 GTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGG
* * *
27995 AGTCACGGCGCCAAAAGTCATGCAAAATTGAGCCGGGTCCGCGGAACGCGTTTTTAGCCAAAAAC
256 AGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAAC
28060 CGTGATGGT
321 CGTGATGGT
** *
28069 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACATGGAAGATTTTTCCTCAATTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * *
28134 CACAATACTGATAAAGAATATCTAATTCAAAGCCAGAAAGACTGAAGGTCTTTTGACGCTTCTTA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
* *
28199 GTTGTTTTTCTTTTCTCTTTTTTTTTCCCGAATTAATTTTTTATTAAATCTAACCATGATTTAGA
131 GTTG------TTTT-TC-TTTTTTTT-CCGAATTAA-TTTTTATTAAATCGAACCATGATTCAGA
* * * *
28264 TGCTCGTAAAAACAAATCCTTAAATCCTAAATGGATGTGATTTGGTTAGATTAACATAGATATTT
186 TGCTCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTT
* * * *
28329 CAAGGTA-TCACGGTGCCAAAAGTCATGCAAAATTGAGCGGGGTCCCCGGAACGCGTTTTTAGCC
251 CAAGG-AGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCC
28393 AAAAACCGTGATGGT
315 AAAAACCGTGATGGT
*
28408 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCATTTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
*
28473 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAGAAAGACTGAAGGCCTTTTCACGCTTCTT
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAA-AAAGACTGAAGGTCTTTTCACGCTTCTT
* * * *
28538 AGTTGTTTTTCCTTTTCTTTTTTTCAGAATTAATTTTCTGTTAAATCGAACCATAAGTCAGATGC
130 AGTTGTTTTT-C---T-TTTTTTTCCGAATTAATTTT-TATTAAATCGAACCATGATTCAGATGC
* * *
28603 TTGTAAAAACAAATCCTTAAATCCTAAATGGCTGAGATTTGGTTAGATTAACATAGATATTTCAA
189 TCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAA
* * * *
28668 GGAGTCATGGCGCCAAAAATAATGCAAAATTGAGCCGGGTCCCCGGAACGCCTTTTTTGCCAAGA
254 GGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAA
28733 ACCGTGATGGT
319 ACCGTGATGGT
* *
28744 TAGAGTACACGATTTCGGCTACAATTTTGCTAAAATTGACCCGAAAGATTTTTCCACAATTTTTG
1 T--AGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTG
* *
28809 GCCACAATACTCATAAAGAATATCTAATTCAAAGCCAGAAAGACTGAAGGCCTTTTCACGCTTCT
64 GCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCT
* * * *
28874 TAGTTGTTGTTGTTGTTGTTTTTTTTTTCGAATTAATTTTTTATTAAATCAAACCATGATTCATA
129 TA---GTTG-T-TT-TT-CTTTTTTTTCCGAATTAA-TTTTTATTAAATCGAACCATGATTCAGA
* * *
28939 TGCTCGTAAAAACAAATCTTTAAATTCTAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTT
186 TGCTCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTT
* *
29004 CAAGGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACACGTTTTCAGCCA
251 CAAGGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCA
29069 AAAACCGTGATGGT
316 AAAACCGTGATGGT
*
29083 TAGTACACTATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
29148 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
* * *
29213 ATTGTTTTTCTTTCTTTTTTTCCGAATTAATTTTTATTAAAAT-GAACCATGATTTAGTTGCTCG
131 GTTGTTTTTC--T-TTTTTTTCCGAATTAATTTTTATT-AAATCGAACCATGATTCAGATGCTCG
* * * *
29277 TAAAAACAAATCCTTAATTTCAAAATGGTTGAGATTTGGTAAGATTAAAATAGATATTTCAAGGA
192 TAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGA
*
29342 GTCATGGCGCC-AAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAATC
257 GTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACC
29406 GTGATGACACGAACGCGT
322 GTGAT---------G-GT
* * * * * * *
29424 T-TTACACGAATTCGGCTACAATTTTGCAAAAAATGACACGAAAAATTTTTTCTCAATTTTTTGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * * * * *
29488 CATAATACTCATCAAGAATATGTAATTCAAAGCCAAAAGGACT----GCCTTTTAACGCTTCTTA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
29549 GTTGTTTTTCATTTTTTTT-CGAATTAATTTTTTATTAAATCGAACCATGATTCAGATGCTCG-A
131 GTTGTTTTTC-TTTTTTTTCCGAATTAA-TTTTTATTAAATCGAACCATGATTCAGATGCTCGTA
29612 AAGAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGAG
194 AA-AACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGAG
* * * * *
29677 TCATGGCGCCAAAAATCATGCAAAATCGAGACGGGTACCCAGAACGCGTTTTTAGCCAAAAACTG
258 TCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCG
29742 TGATGGTT
323 TGATGG-T
* * * *
29750 TA-TACACGATTTCGGCTACAATTTTGTAAAAATTGACCCGAAAGGTTTATCCAT-AATTTTTAG
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCC-TCAATTTTTGG
* * ** * * * **
29813 CCACAATACTCATTAA-AATATATAATTCAGGGCCATAAATA-TAGAAGGGT-TTGTCACATTTC
65 CCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACT-GAA-GGTCTTTTCACGCTTC
* * * * * * *
29875 TAATA-TCGTTTTCCCCATTTTTTT-CGAATTAATATCTAATTAAATC-ATAAC-TCGATTCTGA
128 T--TAGTTGTTTT--TCTTTTTTTTCCGAATTAAT-TTTTATTAAATCGA-ACCAT-GATTCAGA
* * ** *
29936 TGCTCTTAAAATCAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATTAAAATTGATATTT
186 TGCTCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTT
* * * * * *
30001 CAAGGAATCGA-GGCGCCAAAATTCATGCAAAATTGAGGCGGGTCCCCGAAACGCATTTTTAGTC
251 CAAGGAGTC-ATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCC
*
30065 AAAAACTGTGATGGT
315 AAAAACCGTGATGGT
* *
30080 TAGTACACGATTTCAGCTACAATTTTGCTAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * * * *
30145 CACAATACTCATAAAAAATACCCAATTCAAAGACAAAAACACTGAAGGTCTTTTCACGCTTCTTA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
* *
30210 GTTGTTTTTCTTTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATTCAGTTGCTCGTAT
131 GTTGTTTTTCTTTTTTTTCCGAATTAA-TTTTTATTAAATCGAACCATGATTCAGATGCTCGTAA
* * *
30275 AAACAAATCCTTAAATTCAAAATGGTTGAGATTTGGTAAGATTAAAATAGATATTTCAAGGAGTC
195 AAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGAGTC
* * *
30340 AAGGCGCCAAAAATCATGCAAAATTGAGTCGGGTCCCCGGAATGCGTTTTTAGCCAAAAACCGTG
260 ATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTG
30405 ATGGT
325 ATGGT
* * * *
30410 TAGTACACGAATTCGGCTACAATTTTGCAAAAA-TGCACCCAAAAAAAATTTTCCTCAATTTTTG
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTG-ACCC-GAAAGATTTTTCCTCAATTTTTG
* *
30474 GCCACAATACTAATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGGCTTTTCACGCTTCT
64 GCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCT
30539 TAGTTGTTTTTCTTCTTTTTTCCGAATTAATTTTTTATTAAATCGAACCATGATT-ATGATGCTC
129 TAGTTGTTTTTCTT-TTTTTTCCGAATTAA-TTTTTATTAAATCGAACCATGATTCA-GATGCTC
* * *
30603 GTAAAAACGAATCCTTACATCCAATATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGG
191 GTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGG
* * * *
30668 AGTCATGGCGCCAAAAATCATGCAAAATTTAGCCGGGTCCGCGGAACGCGTTTTTAGCCTAAATC
256 AGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAAC
*
30733 TGTGATGG-
321 CGTGATGGT
* * * * *
30741 TAGTACACGATTTCGGCTACAATTTTGCAATAATTGACCCGAAAGATTTTTCCACTACTTTTAGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * * * ** *
30806 CACAATACTCATTAAA-AATATATAATTCAACGCCATAAATA-TAGAAGGGGTTTTCACGTTTCT
66 CACAATACTCA-TAAAGAATATCTAATTCAAAGCCAAAAAGACT-GAAGGTCTTTTCACGCTTCT
* * * * *
30869 AATA-TCGTTTTTCCTATTTTTTT--GAATTAATTTCTAATTAAATCGAAACTTGATTCTGATGC
129 --TAGTTGTTTTT-CT-TTTTTTTCCGAATTAATTT-TTATTAAATCGAACCATGATTCAGATGC
* * ** ** *
30931 TCGTAGAAACAAATCTTTAAATCCAATGTGGCTGAGATTTTATTACATTAAAATAGATATTTCAA
189 TCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAA
** * *
30996 GGAGTTGTGGCGCCATAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCGAAAA
254 GGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAA
31061 ACCGTGATGGT
319 ACCGTGATGGT
* * * *
31072 TAGTACACTATTTCGGCTAAAATTTTGAAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGA
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * * * *
31137 CACAATACTCATAAACAATATCTAATTCAAAGTCAAAGAGACTGAAGATCTTTTCACGCTTCTAA
66 CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
* * * *
31202 GTTGTTTTTC----TTTTCCGAAATAATTTTTATTGAATCGAACCATGATTCTGATGCTCGTAGA
131 GTTGTTTTTCTTTTTTTTCCGAATTAATTTTTATTAAATCGAACCATGATTCAGATGCTCGTAAA
* * *
31263 AACAAATCCTTAAATCCAATATGGCTGAGATTTGATTAGATTAAAATAAATATTTCAAGGAGTCA
196 AACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGAGTCA
* * ** *
31328 TGGTGCCAAAAATCATGCAAAATTGAGTCGGGT-CGTGGAACGCGTTTTTAGCAAAAAACC----
261 TGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGA
31388 --G-
326 TGGT
** *
31389 TA-T--ACGATTTCGGCTACAATTTTGCAAAAATTGACCAAAAAGATTTTTCCTCAATTTTTAGC
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
* * * * *
31451 CACAATACTCATAAA-AAT-TATAATTCAGCA-CCATAATATA-TAGAAGGGT-TTTTCACGTTT
66 CACAATACTCATAAAGAATATCTAATTCA-AAGCCA-AAAAGACT-GAA-GGTCTTTTCACGCTT
* * * *
31511 CTAATA-TCGTTTTTCCCATTTTTTTT--GAATTAATTTCTAATTAAATCGAAAC-TCGATTCTG
127 CT--TAGTTGTTTTT--C-TTTTTTTTCCGAATTAATTT-TTATTAAATCGAACCAT-GATTCAG
* ** * *
31572 ATGTTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTGGGTTAGATTAAAATGGATATT
185 ATGCTCGTAAAAACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATT
* * * *
31637 TCAAGGAATCATGGCGCCAAAAATCGTGCAAAATTGAGCTGGGTCTCCGGAAC-CG----T-G--
250 TCAAGGAGTCATGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCC
31694 ---AA-----A--GT
315 AAAAACCGTGATGGT
* * * * * *
31699 TACTACACGATTTCGGCTAAAATTTTACCAAAATTGACCCGAAA-AGTTTTTCCAT-ATTTTTTA
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGA-TTTTTCC-TCAATTTTTG
* * * * ** * * * * * *
31762 GCCATAATAATCATAAAAAATATATAATTCAGTGCCATAAATATTGAAGGGCTTTCCACGTTTCT
64 GCCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCT
* * **
31827 AATA-TCT-TTTTTCCTATTTTTTT-CGAATTAATTTCTAATTAAATCGAAAC-TCGATTTTGAT
129 --TAGT-TGTTTTT-CT-TTTTTTTCCGAATTAATTT-TTATTAAATCGAACCAT-GATTCAGAT
*
31888 GCTCGT-AAAA-AAATCCTTAAAT--AAAATGTGGCTGAGATTTGGTTAGATTAAAATGGATATT
187 GCTCGTAAAAACAAATCCTTAAATCCAAAA--TGGCTGAGATTTGGTTAGATTAAAATAGATATT
* * **
31949 TCAAGGAATCATGGCGCCAAAAATCATGCAAAATTGA-CTCTGGTCCTGGGAACGCGTTTTTAGC
250 TCAAGGAGTCATGGCGCCAAAAATCATGCAAAATTGAGC-CGGGTCCCCGGAACGCGTTTTTAGC
* * *
32013 TAAAAACCATGAAGGT
314 CAAAAACCGTGATGGT
* * *
32029 TTGTACACGATTTCGGCTAAAATTTTGCAAATATTGACCCGAAA-AGTTTTTCCTCAATTTTTGG
1 TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGA-TTTTTCCTCAATTTTTGG
* * * *
32093 CCACAATACTCATAAAGATTATCTAATTCAAAGTCAAAAATACTGAAGGGCTTTTTCACGCTTCT
65 CCACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTC-TTTTCACGCTTCT
32158 GATCG
Statistics
Matches: 6880, Mismatches: 659, Indels: 444
0.86 0.08 0.06
Matches are distributed among these distances:
309 1 0.00
310 6 0.00
311 2 0.00
312 102 0.01
313 102 0.01
314 150 0.02
315 54 0.01
316 126 0.02
317 4 0.00
318 2 0.00
319 13 0.00
320 118 0.02
321 11 0.00
322 5 0.00
323 93 0.01
324 82 0.01
325 197 0.03
326 76 0.01
327 1 0.00
328 1 0.00
329 34 0.00
330 955 0.14
331 970 0.14
332 516 0.08
333 200 0.03
334 120 0.02
335 353 0.05
336 260 0.04
337 178 0.03
338 680 0.10
339 708 0.10
340 390 0.06
341 309 0.04
342 50 0.01
343 2 0.00
344 7 0.00
345 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (329 bp):
TAGTACACGATTTCGGCTACAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTGGC
CACAATACTCATAAAGAATATCTAATTCAAAGCCAAAAAGACTGAAGGTCTTTTCACGCTTCTTA
GTTGTTTTTCTTTTTTTTCCGAATTAATTTTTATTAAATCGAACCATGATTCAGATGCTCGTAAA
AACAAATCCTTAAATCCAAAATGGCTGAGATTTGGTTAGATTAAAATAGATATTTCAAGGAGTCA
TGGCGCCAAAAATCATGCAAAATTGAGCCGGGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGA
TGGT
Done.