Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018384.1 Corchorus olitorius cultivar O-4 contig18417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84439

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10555--10609
27
2.0
27
96
0
101
34
10
10
43
1.75
12313--12344
17
1.9
16
93
6
55
68
12
12
6
1.37
13939--14096
10
15.7
10
99
0
307
0
19
50
29
1.52
14222--14325
24
4.1
24
87
11
145
55
25
10
8
1.62
14398--14457
29
2.1
29
100
0
120
23
25
16
35
1.95
14758--14832
16
4.4
17
73
23
59
57
1
1
40
1.16
14758--14833
9
7.8
9
73
16
62
56
1
1
40
1.16
16588--16641
27
2.0
27
88
0
81
29
3
20
46
1.68
19610--19641
6
5.3
6
96
0
55
50
31
0
18
1.48
19671--19818
38
3.9
38
91
1
226
22
34
18
24
1.96
19671--19818
77
1.9
75
91
2
242
22
34
18
24
1.96
23653--23906
104
2.5
104
94
1
440
42
10
8
38
1.70
25833--25934
51
2.0
50
81
9
118
22
22
13
41
1.89
41159--41184
13
2.0
13
100
0
52
15
0
30
53
1.42
41538--41588
19
2.7
19
77
14
61
47
0
1
50
1.12
42940--43041
51
2.0
50
81
9
118
22
20
13
43
1.87
43878--43996
22
5.4
22
77
11
102
39
11
9
39
1.74
43879--44074
44
4.5
43
75
14
145
35
13
8
41
1.76
43879--44050
66
2.6
66
78
13
176
37
13
8
40
1.75
44008--44084
21
3.7
19
73
14
57
25
15
7
50
1.71
44848--44904
25
2.4
24
88
5
80
59
3
5
31
1.36
48594--48663
22
3.2
22
76
13
81
57
0
2
40
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58286--58451
85
2.0
85
96
0
305
19
16
20
43
1.88
62633--62702
36
1.9
36
91
0
113
22
11
7
58
1.57
74728--74793
2
33.0
2
80
17
75
46
3
3
46
1.33
74728--74793
9
6.6
10
78
18
75
46
3
3
46
1.33
81930--81985
28
2.0
27
86
3
76
19
30
16
33
1.94
82582--82722
75
1.9
75
85
2
194
40
23
8
27
1.83
83418--83473
28
2.0
27
89
3
85
17
32
16
33
1.92
84302--84330
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!