Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018386.1 Corchorus olitorius cultivar O-4 contig18419, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2142
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32


Found at i:1242 original size:109 final size:109

Alignment explanation


    Indices: 1121--1339  Score: 438
    Period size: 109  Copynumber: 2.0  Consensus size: 109

       1111 CGAATGATAA

                                                                             
       1121 ATAAAAAAACTTTTTGTAAAATAAAAGAGGAATAAGGAAATGTTAAATTTAAGTATCAAATAATA
          1 ATAAAAAAACTTTTTGTAAAATAAAAGAGGAATAAGGAAATGTTAAATTTAAGTATCAAATAATA

                                                        
       1186 TAATCAAAAACTAAATCCAGATTTACTCAAAATGTTGCGGTGAG
         66 TAATCAAAAACTAAATCCAGATTTACTCAAAATGTTGCGGTGAG

                                                                             
       1230 ATAAAAAAACTTTTTGTAAAATAAAAGAGGAATAAGGAAATGTTAAATTTAAGTATCAAATAATA
          1 ATAAAAAAACTTTTTGTAAAATAAAAGAGGAATAAGGAAATGTTAAATTTAAGTATCAAATAATA

                                                        
       1295 TAATCAAAAACTAAATCCAGATTTACTCAAAATGTTGCGGTGAG
         66 TAATCAAAAACTAAATCCAGATTTACTCAAAATGTTGCGGTGAG

             
       1339 A
          1 A

       1340 AGTGAAAGCT


Statistics
Matches: 110,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 109  110  1.00

ACGTcount: A:0.50, C:0.08, G:0.14, T:0.28


Consensus pattern (109 bp):   
ATAAAAAAACTTTTTGTAAAATAAAAGAGGAATAAGGAAATGTTAAATTTAAGTATCAAATAATA
TAATCAAAAACTAAATCCAGATTTACTCAAAATGTTGCGGTGAG

Found at i:1949 original size:19 final size:18

Alignment explanation


    Indices: 1910--1945  Score: 56
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1900 ATACATTAAT

                              
       1910 TATTTTTTTTAGTATAAA
          1 TATTTTTTTTAGTATAAA

                               
       1928 TATTTTGTTTTA-TATAAA
          1 TATTTT-TTTTAGTATAAA

       1946 ATATAAACAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  18   12  0.71
  19    5  0.29

ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61


Consensus pattern (18 bp):   
TATTTTTTTTAGTATAAA
Done.