Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018387.1 Corchorus olitorius cultivar O-4 contig18420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--44
2
22.0
2
100
0
88
50
0
0
50
1.00
1419--1453
13
2.7
13
90
0
52
17
17
20
45
1.85
1590--1707
47
2.5
47
89
5
184
5
25
19
49
1.71
1617--1704
18
5.3
18
70
25
77
5
26
20
47
1.72
1971--2018
22
2.3
21
78
7
53
12
52
0
35
1.40
4382--4423
3
14.0
3
94
0
75
64
0
0
35
0.94
4383--4445
12
5.2
12
81
7
65
57
3
1
38
1.24
5617--5643
13
2.1
13
100
0
54
59
18
7
14
1.58
5781--5859
3
27.0
3
89
5
99
64
5
0
30
1.15
5861--5885
3
8.3
3
100
0
50
32
0
36
32
1.58
7271--7333
3
21.0
3
100
0
126
66
0
0
33
0.92
7238--7399
84
1.9
84
89
2
254
58
5
3
33
1.37
7372--7399
3
9.3
3
100
0
56
64
0
0
35
0.94
7904--7940
20
2.0
20
89
10
60
40
21
16
21
1.91
8703--9007
152
2.0
152
98
0
592
28
11
31
28
1.91
13298--13343
22
2.1
22
100
0
92
26
34
13
26
1.92

Tables:   1

The End!