Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018388.1 Corchorus olitorius cultivar O-4 contig18421, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51112

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1093--1235
72
2.0
72
94
0
250
31
4
17
46
1.67
2665--2968
39
7.7
40
92
1
463
19
28
20
30
1.97
2665--2968
118
2.6
120
90
3
481
19
28
20
30
1.97
2940--2999
31
1.9
31
93
0
102
15
30
21
33
1.94
6686--6737
8
6.4
8
79
14
54
73
1
11
13
1.19
6686--6737
17
3.2
15
75
19
59
73
1
11
13
1.19
7120--7371
7
38.3
7
96
4
344
70
15
0
14
1.18
14981--15015
16
2.2
16
89
0
52
5
17
40
37
1.73
17989--18043
22
2.5
22
100
0
110
9
32
0
58
1.30
18972--19016
22
2.0
22
95
0
81
40
24
0
35
1.56
19147--19186
21
1.9
21
100
0
80
32
30
20
17
1.95
20161--20235
33
2.3
34
81
6
91
14
36
30
18
1.91
20254--20345
17
5.2
17
74
17
71
53
1
0
45
1.07
20284--20341
22
2.7
21
80
17
73
60
1
0
37
1.07
20254--20339
7
12.1
7
77
16
70
52
1
0
46
1.08
20305--20353
25
2.0
25
91
0
80
65
0
0
34
0.93
20447--20471
12
2.1
12
100
0
50
24
20
16
40
1.91
20626--20685
20
3.2
20
69
13
54
43
3
8
45
1.50
20831--20862
2
16.0
2
100
0
64
50
0
0
50
1.00
22813--22887
31
2.4
31
82
11
89
32
18
8
41
1.80
26938--26993
28
2.0
28
100
0
112
32
17
25
25
1.97
26941--27000
28
2.1
28
93
0
102
30
18
23
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30421--30568
74
2.0
74
100
0
296
28
6
24
40
1.80
30660--30689
15
2.0
15
100
0
60
33
20
13
33
1.91
30887--30932
22
2.1
22
95
0
83
63
13
0
23
1.30
33436--33484
24
2.0
24
96
0
89
30
22
4
42
1.72
38451--38497
5
9.6
5
86
13
71
61
17
0
21
1.34
38403--38495
6
16.0
6
87
8
52
63
8
1
26
1.30
38448--38488
19
2.2
18
95
4
73
63
14
0
21
1.30
38403--38454
3
17.3
3
95
0
95
65
0
1
32
1.04
38442--38493
24
2.2
24
89
6
79
63
13
0
23
1.29
41354--41399
21
2.2
21
96
0
83
34
26
15
23
1.94
41553--41587
18
1.9
18
100
0
70
51
22
11
14
1.74
44734--44802
28
2.5
28
97
0
129
40
15
10
33
1.81
45148--45530
193
2.0
192
97
0
721
38
13
15
32
1.87
46546--46605
2
30.0
2
86
0
84
45
1
5
48
1.34
48920--48968
25
2.0
25
84
8
64
59
4
2
34
1.28
50994--51052
29
2.0
29
96
0
109
40
8
27
23
1.83

Tables:   1

The End!