Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018392.1 Corchorus olitorius cultivar O-4 contig18425, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66081

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20207--20232
12
2.2
12
100
0
52
38
11
23
26
1.89
26113--26501
214
1.8
214
97
1
735
32
9
26
31
1.88
40102--41087
517
1.9
517
97
0
1846
39
14
19
26
1.90
42397--42730
167
2.0
165
94
3
582
32
12
29
26
1.92
43803--43877
22
3.3
22
84
3
96
44
2
2
50
1.30
43815--43893
18
4.5
18
87
6
117
45
3
1
49
1.28
43803--43893
6
15.8
6
74
8
82
43
3
2
50
1.30
49202--49242
2
21.5
2
81
18
52
51
2
0
46
1.14
49302--49365
29
2.2
29
94
0
110
32
3
15
48
1.61
49410--49465
29
1.9
29
96
0
103
21
3
30
44
1.69
50528--50564
19
2.0
19
94
5
67
62
0
0
37
0.96
57705--57735
11
2.8
11
100
0
62
90
0
9
0
0.46
62360--62393
13
2.6
13
82
17
52
0
23
0
76
0.79
65665--65825
78
2.1
78
95
0
286
33
13
1
51
1.49

Tables:   1

The End!