Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000184.1 Corchorus olitorius cultivar O-4 contig00184, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 785

Length: 1309
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37


Found at i:1182 original size:23 final size:23

Alignment explanation


    Indices: 1152--1199  Score: 69
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       1142 ATTTGTAATT

                    *          *   
       1152 ACCTTTATTATTGACGAAATGAA
          1 ACCTTTATAATTGACGAAAGGAA

                          *        
       1175 ACCTTTATAATTGATGAAAGGAA
          1 ACCTTTATAATTGACGAAAGGAA

              
       1198 AC
          1 AC

       1200 TAAAATATTG


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31


Consensus pattern (23 bp):   
ACCTTTATAATTGACGAAAGGAA
Done.