Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001840.1 Corchorus olitorius cultivar O-4 contig01840, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1063
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40


Found at i:559 original size:25 final size:25

Alignment explanation


    Indices: 531--595  Score: 130
    Period size: 25  Copynumber: 2.6  Consensus size: 25

        521 TAAGGTTATT

                                     
        531 AAATTAGTTGAAAGTTATCTAAAAA
          1 AAATTAGTTGAAAGTTATCTAAAAA

                                     
        556 AAATTAGTTGAAAGTTATCTAAAAA
          1 AAATTAGTTGAAAGTTATCTAAAAA

                           
        581 AAATTAGTTGAAAGT
          1 AAATTAGTTGAAAGT

        596 AGTATATTGC


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   40  1.00

ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32


Consensus pattern (25 bp):   
AAATTAGTTGAAAGTTATCTAAAAA
Done.