Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018400.1 Corchorus olitorius cultivar O-4 contig18433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12053
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27


Found at i:5221 original size:68 final size:68

Alignment explanation


    Indices: 5112--5248  Score: 265
    Period size: 68  Copynumber: 2.0  Consensus size: 68

       5102 AGAAGGTAAG

                                                                             
       5112 TCTTATCACCACTCTGCTAAAGCTAAGAAGTTGGTTGATAGAGCTAAGCTAAAAACTCTGGGTGT
          1 TCTTATCACCACTCTGCTAAAGCTAAGAAGTTGGTTGATAGAGCTAAGCTAAAAACTCTGGGTGT

               
       5177 GCA
         66 GCA

                                                                     *       
       5180 TCTTATCACCACTCTGCTAAAGCTAAGAAGTTGGTTGATAGAGCTAAGCTAAAAACTTTGGGTGT
          1 TCTTATCACCACTCTGCTAAAGCTAAGAAGTTGGTTGATAGAGCTAAGCTAAAAACTCTGGGTGT

               
       5245 GCA
         66 GCA

             
       5248 T
          1 T

       5249 TCAGATCGGC


Statistics
Matches: 68,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  68   68  1.00

ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Consensus pattern (68 bp):   
TCTTATCACCACTCTGCTAAAGCTAAGAAGTTGGTTGATAGAGCTAAGCTAAAAACTCTGGGTGT
GCA
Done.