Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018403.1 Corchorus olitorius cultivar O-4 contig18436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34963

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26--55
10
3.0
10
100
0
60
30
0
0
70
0.88
11987--12015
3
9.7
3
100
0
58
68
0
31
0
0.89
13852--13897
24
2.0
24
82
4
58
30
8
8
52
1.62
13981--14069
45
2.1
42
83
12
110
35
15
7
40
1.77
14329--14379
14
3.8
13
79
7
57
43
13
11
31
1.80
14329--14373
13
3.4
13
81
6
63
42
13
13
31
1.82
16897--16934
13
2.9
14
84
11
53
36
2
2
57
1.26
17094--17144
25
2.0
25
85
7
68
47
0
25
27
1.53
19082--19138
25
2.4
25
77
16
66
59
3
1
35
1.25
19223--19283
29
2.1
30
84
3
79
42
4
3
49
1.40
20035--20067
17
1.9
17
88
11
50
39
0
0
60
0.97
20877--21037
78
2.1
78
90
2
252
51
0
12
35
1.44
21273--21313
21
1.9
22
85
5
57
46
29
14
9
1.77
22452--22588
72
1.9
72
86
7
197
40
6
18
33
1.77
30817--30847
1
31.0
1
100
0
62
0
0
0
100
0.00
33915--33963
2
24.5
2
100
0
98
48
0
51
0
1.00
34914--34958
2
22.5
2
100
0
90
51
0
48
0
1.00

Tables:   1

The End!