Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018407.1 Corchorus olitorius cultivar O-4 contig18440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52813

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1867--1918
3
18.7
3
84
15
76
69
0
0
30
0.89
1865--1921
10
5.5
11
80
17
68
70
0
0
29
0.88
6110--6176
24
2.8
24
82
8
66
11
20
47
19
1.81
6155--6200
24
1.9
24
82
8
58
10
21
47
19
1.80
10418--10556
31
4.5
31
96
0
251
21
22
25
30
1.99
10717--10746
15
2.0
15
100
0
60
40
0
0
60
0.97
11952--12019
31
2.2
29
80
14
75
26
16
27
29
1.97
14792--15002
22
9.4
22
71
12
101
39
9
12
38
1.75
14817--14894
23
3.4
24
86
6
92
37
10
10
42
1.73
14855--14918
23
2.8
23
82
0
65
43
10
7
37
1.69
26367--26497
45
2.9
45
95
0
235
41
10
13
33
1.79
27343--27398
22
2.6
21
76
15
60
51
8
16
23
1.72
27383--27425
21
2.0
21
86
0
59
48
4
16
30
1.66
27426--27545
22
5.5
22
76
11
113
40
10
12
37
1.77
31244--31348
52
2.0
52
98
0
201
32
14
9
43
1.77
40127--40165
19
2.1
19
100
0
78
20
5
25
48
1.70
41914--41939
13
2.0
13
100
0
52
23
7
38
30
1.83
47143--47181
18
2.2
18
95
0
69
23
10
25
41
1.86

Tables:   1

The End!