Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018408.1 Corchorus olitorius cultivar O-4 contig18441, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 993

Length: 1656
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36


Found at i:1341 original size:25 final size:25

Alignment explanation


    Indices: 1287--1342  Score: 69
    Period size: 25  Copynumber: 2.2  Consensus size: 25

       1277 AGTGGCCTAT

                    *         *      
       1287 GCGTTTTCTAAACGCAAGCACAGAC
          1 GCGTTTTCCAAACGCAAGAACAGAC

            *                         
       1312 TCGTTTTCCAAACGCAAGAACATGA-
          1 GCGTTTTCCAAACGCAAGAACA-GAC

                  
       1337 GCGTTT
          1 GCGTTT

       1343 ACCCAGCGCA


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  25   24  0.92
  26    2  0.08

ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25


Consensus pattern (25 bp):   
GCGTTTTCCAAACGCAAGAACAGAC
Done.