Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018411.1 Corchorus olitorius cultivar O-4 contig18444, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101919

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3039--3083
2
22.0
2
90
4
72
46
2
0
51
1.13
8648--8683
14
2.6
13
87
12
54
88
11
0
0
0.50
8648--8684
12
2.9
13
88
11
51
86
13
0
0
0.57
10149--10192
21
2.2
19
84
8
52
68
6
6
18
1.35
11601--11650
1
50.0
1
95
0
91
0
2
0
98
0.14
19351--19393
15
2.9
15
85
0
59
11
74
0
13
1.07
29222--29246
13
1.9
13
100
0
50
40
16
12
32
1.84
33301--33500
29
6.9
29
88
0
274
43
23
17
16
1.88
33750--34442
181
3.9
181
93
1
1143
42
16
15
26
1.87
33750--34442
121
5.8
119
93
2
1133
42
16
15
26
1.87
33750--34442
60
11.6
59
93
2
1120
42
16
15
26
1.87
35270--35348
37
2.2
35
89
10
124
11
17
10
60
1.57
51607--51632
2
13.0
2
100
0
52
50
0
0
50
1.00
51788--51865
41
1.9
41
91
0
129
42
0
15
42
1.47
53390--53450
30
2.0
30
100
0
122
40
13
16
29
1.86
53532--53680
72
2.1
72
83
7
187
25
8
22
44
1.80
55878--55933
3
18.7
3
100
0
112
32
0
0
67
0.91
56526--56563
11
3.5
11
85
10
51
57
2
0
39
1.12
61564--61657
45
2.2
43
83
11
113
39
21
4
35
1.73
61732--62319
294
2.0
291
88
4
858
43
16
15
24
1.87
63608--63668
30
2.1
30
84
9
81
49
3
4
42
1.40
63728--63760
13
2.3
15
90
10
52
39
0
6
54
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63770--63818
26
1.9
25
88
12
73
42
0
0
57
0.99
64178--64215
15
2.7
14
80
11
51
31
0
0
68
0.90
83786--83827
21
2.0
21
100
0
84
33
0
33
33
1.58
84546--84813
134
2.0
134
96
1
493
31
14
7
47
1.71
95670--95698
14
2.0
15
93
6
51
20
6
3
68
1.27
97868--97916
6
7.7
6
80
11
53
77
14
4
4
1.06
97864--97916
20
2.7
19
82
5
61
77
15
3
3
1.06
100292--100372
39
2.0
40
92
2
137
50
8
3
37
1.51
100363--100408
24
2.0
23
95
4
83
30
6
8
54
1.56
101398--101466
35
1.9
36
91
2
113
59
8
10
21
1.57

Tables:   1

The End!