Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018416.1 Corchorus olitorius cultivar O-4 contig18449, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58017

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
235--304
36
1.9
36
91
0
113
21
10
8
60
1.55
812--1225
204
2.0
205
92
1
697
43
7
11
37
1.70
1298--1344
25
1.9
24
95
4
85
55
8
6
29
1.55
1335--1415
39
2.0
40
90
2
128
37
4
8
49
1.55
12570--12613
15
2.9
15
86
10
63
0
50
0
50
1.00
12575--12618
15
2.9
14
83
6
52
2
50
0
47
1.13
17163--17199
1
37.0
1
100
0
74
100
0
0
0
0.00
27696--27737
17
2.6
17
92
7
70
38
35
11
14
1.83
38900--41186
763
3.0
757
86
5
3170
36
17
14
31
1.90
42340--42374
18
1.9
18
94
0
61
51
11
8
28
1.67
42486--42553
29
2.3
30
82
5
84
25
20
11
42
1.86
42860--42892
15
2.1
16
94
5
59
0
21
0
78
0.75
42978--43214
125
1.9
124
85
6
327
52
0
10
35
1.43
43833--43929
31
3.1
31
93
1
158
31
14
10
43
1.79
44053--44126
29
2.5
31
84
4
98
44
13
16
25
1.84
45340--45381
20
2.1
20
95
0
75
40
9
7
42
1.65
57536--57596
32
1.9
32
89
0
95
27
19
4
47
1.70

Tables:   1

The End!