Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018419.1 Corchorus olitorius cultivar O-4 contig18452, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71507

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3043--3085
14
3.1
14
86
0
68
44
2
2
51
1.27
5366--5474
50
2.2
50
80
14
118
21
23
11
43
1.86
6100--6160
22
2.8
22
85
5
79
47
8
3
40
1.49
6124--6290
22
7.6
22
70
15
69
35
8
17
37
1.81
7112--7214
22
4.7
22
74
13
79
34
7
14
42
1.75
7158--7214
23
2.7
21
84
10
80
38
7
12
42
1.70
7231--7286
22
2.5
22
88
0
85
42
7
16
33
1.75
7311--7401
22
3.9
22
75
14
76
38
7
16
37
1.77
7203--7468
129
2.1
125
81
12
299
36
8
18
37
1.81
7517--7596
23
3.5
23
78
8
74
40
6
13
40
1.70
7437--7951
22
23.4
22
68
10
196
37
11
15
35
1.84
7516--8001
44
10.9
45
68
11
182
36
11
15
35
1.84
10988--11018
14
2.2
14
94
0
53
54
16
9
19
1.68
11738--11835
29
3.4
29
98
0
187
30
15
16
37
1.89
13108--13334
116
2.0
116
99
0
445
35
11
22
30
1.90
24145--24200
29
2.0
28
89
3
85
39
19
10
30
1.86
24711--24757
25
1.9
24
82
4
58
10
12
40
36
1.78
24780--24874
32
3.0
32
76
6
77
23
10
28
37
1.88
25015--25053
20
2.0
20
85
10
53
35
5
5
53
1.45
25096--25155
16
3.7
17
76
8
54
8
8
26
56
1.57
40607--40845
117
2.1
117
94
2
419
24
25
30
19
1.98
46202--46255
19
2.6
21
77
19
60
38
18
3
38
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52433--52482
22
2.4
22
90
6
77
46
2
4
48
1.32
52436--52484
21
2.3
22
85
3
73
44
2
4
48
1.33
56484--56510
5
5.4
5
100
0
54
62
0
0
37
0.95
57745--57776
16
2.0
16
93
0
55
46
6
0
46
1.27
60424--60737
164
1.9
164
92
1
522
21
24
26
27
1.99
63208--63262
10
5.5
10
95
0
83
38
16
9
36
1.80
63208--63262
20
2.8
20
91
0
92
38
16
9
36
1.80
64957--65029
25
3.0
24
76
9
76
10
41
15
32
1.82

Tables:   1

The End!