Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018420.1 Corchorus olitorius cultivar O-4 contig18453, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34951

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1236--1284
25
2.0
25
91
0
80
10
42
16
30
1.81
1361--1443
40
2.1
40
93
0
139
26
30
12
31
1.92
2563--2606
12
3.6
12
81
6
52
27
15
18
38
1.91
4387--4412
13
2.0
13
100
0
52
46
23
0
30
1.53
4755--4828
2
42.0
2
69
24
51
51
0
1
47
1.09
4763--4825
31
2.1
30
90
3
99
50
0
1
47
1.10
5237--5277
21
2.0
21
90
0
64
53
2
4
39
1.35
6655--6696
20
2.2
19
86
4
57
16
0
4
78
0.91
17815--18078
109
2.5
108
88
4
360
39
8
9
42
1.68
24887--24928
20
2.0
20
86
4
57
40
23
7
28
1.81
24989--25175
102
1.8
102
87
3
279
37
11
10
39
1.77
28768--28816
25
2.0
23
84
7
62
28
14
6
51
1.66
28735--28816
23
3.5
23
76
6
76
32
12
6
48
1.65
30720--30811
46
2.0
45
89
6
141
43
5
7
43
1.56
32438--32484
21
2.2
21
84
3
58
74
2
6
17
1.12
33138--33164
14
1.9
14
100
0
54
44
14
3
37
1.63
34520--34551
15
2.1
15
100
0
64
46
21
6
25
1.74

Tables:   1

The End!