Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018421.1 Corchorus olitorius cultivar O-4 contig18454, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53600

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4398--4461
3
21.3
3
80
0
56
37
35
23
3
1.71
4504--4584
3
27.0
3
87
0
54
51
34
13
0
1.41
4517--4572
9
6.2
9
87
0
67
50
33
16
0
1.45
4583--4631
18
2.7
18
80
0
53
22
53
20
4
1.63
14960--15016
25
2.4
24
85
5
71
57
3
7
31
1.42
18037--18092
27
2.1
27
89
0
85
42
21
12
23
1.86
31622--31671
21
2.3
21
80
10
57
16
8
8
68
1.38
35315--35349
10
3.5
10
85
14
54
62
8
25
2
1.38
37816--38156
57
6.0
57
88
2
490
43
19
17
19
1.88
39061--39186
43
3.0
41
86
10
182
11
21
10
57
1.63
41649--41688
15
2.6
16
88
4
55
15
10
12
62
1.54
53554--53593
2
20.0
2
100
0
80
50
0
0
50
1.00

Tables:   1

The End!