Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018423.1 Corchorus olitorius cultivar O-4 contig18456, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58358

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2096--2145
5
10.4
5
87
8
77
56
0
22
22
1.43
2936--2962
6
4.5
6
100
0
54
37
0
33
29
1.58
7974--8080
51
2.1
51
81
8
121
21
19
12
46
1.82
8325--8488
78
2.1
76
96
2
301
24
27
18
29
1.98
14462--14568
51
2.1
51
81
8
121
21
19
12
46
1.82
18827--18936
49
2.2
52
82
12
149
37
4
11
46
1.61
30279--30309
15
2.1
15
100
0
62
45
12
29
12
1.80
31762--31822
28
2.1
30
87
6
90
36
3
4
55
1.38
39892--39920
15
1.9
15
100
0
58
20
17
48
13
1.81
43464--43502
19
2.1
19
90
0
60
41
7
12
38
1.72
51330--51585
123
2.0
128
90
6
405
50
1
10
37
1.47
52008--52043
18
2.0
18
88
0
54
22
27
27
22
1.99
52745--52824
41
2.0
41
87
5
117
43
15
11
30
1.81
55559--55617
32
1.9
31
86
10
86
37
23
6
32
1.81

Tables:   1

The End!