Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018424.1 Corchorus olitorius cultivar O-4 contig18457, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123329

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--524
204
2.6
204
96
2
945
45
8
11
34
1.71
659--739
39
2.0
40
92
2
137
37
3
8
50
1.51
18120--18167
22
2.2
22
85
7
62
64
10
22
2
1.35
21604--21632
12
2.3
13
94
5
51
0
20
20
58
1.39
31464--31504
19
2.2
19
95
0
73
31
4
14
48
1.65
37670--37704
17
2.1
17
94
0
61
80
8
11
0
0.92
39886--39958
36
2.0
36
83
0
92
20
19
13
46
1.83
59686--59751
33
2.0
33
96
0
123
24
6
19
50
1.70
63944--63970
14
1.9
14
100
0
54
33
7
7
51
1.58
64593--64643
10
4.9
10
79
9
57
13
60
19
5
1.53
64857--64886
15
1.9
16
93
6
53
13
30
3
53
1.56
70608--70659
18
2.9
18
88
0
77
9
25
28
36
1.87
71184--71321
58
2.4
59
93
1
233
15
24
34
26
1.95
75800--75837
18
2.1
18
90
5
58
68
7
13
10
1.39
79750--79809
13
4.4
13
77
22
61
76
21
1
0
0.87
79736--79791
21
2.7
20
89
8
85
83
16
0
0
0.64
79743--79814
4
18.5
4
77
16
71
77
20
1
0
0.84
79736--79814
12
6.8
11
78
15
79
79
18
1
0
0.80
79870--80153
39
7.3
39
79
7
269
27
20
16
36
1.93
79862--80153
78
3.7
78
80
6
301
27
19
16
36
1.93
79865--80153
117
2.5
116
82
9
329
27
20
16
35
1.94
80043--80233
105
1.8
104
82
9
246
25
22
15
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80161--80274
38
2.9
39
79
5
97
25
25
13
35
1.92
80289--80364
38
2.0
38
92
0
125
22
18
18
40
1.91
80292--80374
38
2.2
38
86
0
112
22
19
19
38
1.93
83126--83150
10
2.5
10
100
0
50
20
12
16
52
1.75
85072--85127
27
2.2
26
83
6
69
21
7
21
50
1.72
93616--93687
33
2.2
33
92
0
117
27
18
8
45
1.77
95517--95553
18
2.1
18
100
0
74
43
10
10
35
1.75
97379--97413
11
3.2
11
91
0
61
80
17
2
0
0.84
102739--103003
122
2.1
123
86
9
363
48
2
11
37
1.53
106891--107016
56
2.3
53
75
12
121
43
21
7
26
1.80
107021--107064
17
2.6
17
88
0
61
43
9
9
38
1.68
106983--107243
44
6.0
44
73
12
180
41
13
8
36
1.75
107048--107243
22
8.9
22
79
7
159
40
12
8
37
1.74
109311--109496
93
2.0
94
93
1
320
37
18
18
24
1.94
111394--111438
2
22.5
2
95
0
81
48
0
0
51
1.00
111971--112047
7
10.9
7
79
18
72
59
0
0
40
0.97
111989--112046
3
18.3
3
76
16
55
62
0
0
37
0.96
111971--112046
10
7.2
10
77
20
75
60
0
0
39
0.97
112133--112157
12
2.1
12
100
0
50
24
20
16
40
1.91
113836--113865
15
2.0
15
93
0
51
36
13
20
30
1.90
115277--115316
13
3.1
13
96
0
71
20
22
25
32
1.98
116856--116953
35
2.8
35
92
0
160
25
23
19
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118711--118771
29
2.1
29
90
0
95
34
14
19
31
1.92
118840--118908
32
2.1
34
89
5
106
47
4
30
17
1.67
119706--119759
24
2.2
25
86
3
74
25
25
9
38
1.86
121668--121721
19
2.6
21
77
19
60
38
18
3
38
1.69
121960--122061
16
6.4
15
68
15
62
8
15
37
38
1.79
121972--122061
32
2.8
32
90
6
146
10
15
37
36
1.81
122235--122281
13
3.8
12
78
13
51
55
4
0
40
1.19
123031--123079
17
2.9
17
78
0
62
2
24
44
28
1.65

Tables:   1

The End!