Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018425.1 Corchorus olitorius cultivar O-4 contig18458, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58839

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1468--1514
20
2.3
20
96
0
85
29
10
8
51
1.66
1610--1673
32
2.0
31
90
3
101
23
23
17
35
1.95
1652--1694
21
2.0
21
81
4
50
27
13
25
32
1.94
8243--8395
15
10.8
15
73
14
112
54
5
20
18
1.62
8275--8394
7
16.3
7
70
16
73
55
4
22
17
1.58
8293--8379
42
2.0
43
95
2
158
54
4
21
19
1.62
8203--8498
57
5.1
57
72
12
223
54
6
19
19
1.65
14453--14487
16
2.2
16
100
0
70
48
14
20
17
1.81
19968--19992
9
2.8
9
100
0
50
12
12
0
76
1.04
20297--20338
13
3.3
12
86
6
57
52
9
2
35
1.47
20668--20742
3
25.0
3
88
0
105
0
40
0
60
0.97
20672--20751
12
6.7
12
92
0
133
0
42
0
57
0.98
20678--20753
9
8.8
9
81
8
68
0
43
0
56
0.99
21712--21753
14
3.1
14
74
19
52
35
4
0
59
1.19
21706--21748
13
3.2
13
75
18
52
41
2
0
55
1.12
24918--24973
28
2.0
28
92
0
94
35
5
19
39
1.75
29188--29227
14
2.7
14
88
7
53
35
2
20
42
1.65
29189--29240
13
3.6
14
82
10
52
34
3
17
44
1.67
31769--31982
99
2.2
99
98
0
410
43
12
12
31
1.80
36603--36641
16
2.4
17
82
8
53
7
35
2
53
1.43
36603--36646
16
2.7
16
82
3
52
6
36
2
54
1.40
38285--38309
3
8.3
3
100
0
50
68
0
0
32
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39274--39315
15
2.8
15
89
7
59
14
21
16
47
1.82
49851--49899
25
2.0
25
100
0
98
20
26
8
44
1.79
52669--52708
19
2.1
19
85
0
53
25
15
10
50
1.74
55855--55909
6
9.7
6
74
18
55
72
0
27
0
0.85
55856--55908
16
3.2
17
73
13
56
71
0
28
0
0.86

Tables:   1

The End!