Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018426.1 Corchorus olitorius cultivar O-4 contig18459, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122379

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21--46
2
13.0
2
100
0
52
50
0
0
50
1.00
3215--3259
15
2.9
15
83
6
54
53
13
0
33
1.40
3433--3468
19
1.9
19
88
5
56
30
2
0
66
1.06
3589--3615
13
2.1
13
100
0
54
40
0
14
44
1.46
5181--5215
18
1.9
18
94
0
61
51
11
8
28
1.67
5415--5500
35
2.4
34
88
7
111
45
15
15
24
1.84
6638--6678
2
20.5
2
94
0
73
48
0
2
48
1.14
14495--14681
91
2.0
92
94
1
331
29
24
17
28
1.97
36141--36211
37
1.9
37
97
0
133
35
18
14
32
1.90
38612--38640
4
7.2
4
100
0
58
75
0
0
24
0.80
46922--47632
354
2.0
354
100
0
1422
40
18
12
28
1.87
51563--51605
16
2.9
15
83
10
52
51
6
0
41
1.29
56565--56678
56
2.0
56
93
0
192
35
22
1
40
1.65
56744--56824
42
1.9
42
97
0
153
29
7
16
46
1.73
59531--59571
17
2.4
17
80
11
57
82
0
17
0
0.66
68529--68654
62
2.0
62
98
0
243
26
19
14
39
1.90
72728--72753
13
2.0
13
100
0
52
53
23
7
15
1.67
73036--73112
22
3.6
21
74
11
66
38
11
10
38
1.76
73140--73202
20
3.0
21
83
9
74
30
12
7
49
1.69
74073--74144
35
2.1
35
86
0
99
34
33
2
29
1.72
74865--74893
15
1.9
15
100
0
58
48
13
0
37
1.43
75158--75242
3
28.3
3
100
0
170
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83268--83317
15
3.3
16
83
13
70
4
46
0
50
1.20
84030--84076
15
3.1
15
100
0
94
59
12
12
14
1.61
109730--109765
16
2.2
17
90
5
56
11
13
0
75
1.06
111420--111480
20
3.0
20
86
9
97
52
6
26
14
1.66
113665--113778
56
2.0
56
96
0
210
34
24
1
39
1.66
113844--113924
42
1.9
42
97
0
153
29
7
16
46
1.73
115653--115708
29
1.9
29
92
0
94
35
25
7
32
1.83
116003--116035
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!