Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018428.1 Corchorus olitorius cultivar O-4 contig18461, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28921

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
858--1378
54
9.7
54
85
3
640
32
23
18
26
1.97
1347--2129
35
22.4
35
89
1
1108
36
19
15
28
1.92
1904--1959
19
3.1
19
63
31
50
35
23
14
26
1.93
2170--2353
54
3.4
54
88
1
237
34
20
15
28
1.94
3716--3761
21
2.2
21
88
7
67
8
19
2
69
1.25
3716--3781
20
3.4
19
78
14
64
10
19
1
68
1.27
6866--6974
44
2.4
45
83
8
143
60
0
8
30
1.32
6865--6947
19
4.1
19
69
23
53
57
1
9
31
1.38
6919--6976
27
2.1
27
81
12
66
63
0
5
31
1.16
8332--8393
30
2.1
30
93
0
106
25
22
4
46
1.71
17785--17855
28
2.5
28
100
0
142
32
14
21
32
1.93
21485--21521
16
2.3
16
100
0
74
24
5
18
51
1.67
22964--23030
21
3.2
21
66
16
57
52
11
1
34
1.48
23144--23559
203
2.0
206
90
5
664
36
11
8
43
1.70
25378--25492
58
2.0
58
87
3
169
32
20
14
32
1.93
27180--27290
56
2.0
55
96
1
204
34
24
1
39
1.66
27359--27439
42
1.9
42
94
0
144
29
6
16
48
1.70

Tables:   1

The End!